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BaseInfo

ncRNA ID novel_jre_miR909
Species Juglans regia
Class miRNA
Genome position NW_017388864.1:61754-61884 [+]
Reference genome wgs.5d
Source SRR1170968
Length 24
Mature sequence(if miRNA) 108 - AAUGACUAUUGUAUUGCCUUGGCC - 131
Stem-loop(if miRNA) --                A          A              --UCUU  -      A  G CAU
  CCAAGGCAAUACAAUA UCAUUCUUAA CAAUGUGAGACUUA      GG CCUACA UA U   U
  |||||||||||||||| |||||||||| ||||||||||||||      || |||||| || |
  GGUUCCGUUAUGUUAU AGUAAGAAUU GUUACACUUUGAAU      UC GGGUGU AU A   C
CC                C          C              UACAAU  A      A  G AUU
Stem-loop sequence CCAAGGCAAUACAAUAAUCAUUCUUAAACAAUGUGAGACUUAUCUUGGCCUACAAUAGUCAUUCUUAAGUAAUGUGGGACUUAACAUUAAGUUUCACAUUGCUUAAGAAUGACUAUUGUAUUGCCUUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018972167.1
ncRNA:24   CCGGUUCCGUUAUGUUAUCAGUAA   1
  *|**|||||||*|||||||||||*
targets:1129   UGGAAAGGCAAGACAAUAGUCAUG   1152

2.5 PREDICTED: Juglans regia trihelix transcription factor GT-2-like (LOC108996329), mRNA NA coding protein psRNATarget