Search result

BaseInfo

ncRNA ID novel_jre_miR907
Species Juglans regia
Class miRNA
Genome position NW_017389369.1:56789-56893 [-]
Reference genome wgs.5d
Source SRR1170968
Length 23
Mature sequence(if miRNA) 83 - AUUCUAUAAAUUGAUGUGGUUUG - 105
Stem-loop(if miRNA) --AUUC                       U   UA      ------       U
      UAUAAAUUGAUGUGGUUUGAUGU AUU  UUAGAU      UGUGAAG U
      ||||||||||||||||||||||| |||  ||||||      ||||||| A
      AUGUUUAACUGCACUAAAUUACA UAA  AAUCUA      AUAUUUU C
AUUAAA                       C   GC      AAUAAA       U
Stem-loop sequence AUUCUAUAAAUUGAUGUGGUUUGAUGUUAUUUAUUAGAUUGUGAAGUUACUUUUUAUAAAAUAAAUCUAACGAAUCACAUUAAAUCACGUCAAUUUGUAAAAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018987179.1
ncRNA:23   GUUUGGUGUAGUUAAAUAUCUUA   1
  **||||*||||||||*|||||||
targets:1460   AUAACCCCAUCAAUUGAUAGAAU   1482

2.5 PREDICTED: Juglans regia RNA polymerase sigma factor sigA-like (LOC109007498), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018987180.1
ncRNA:23   GUUUGGUGUAGUUAAAUAUCUUA   1
  **||||*||||||||*|||||||
targets:1463   AUAACCCCAUCAAUUGAUAGAAU   1485

2.5 PREDICTED: Juglans regia RNA polymerase sigma factor sigA-like (LOC109007498), transcript variant X2, mRNA NA coding protein psRNATarget