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BaseInfo

ncRNA ID	novel_jre_miR903
Species	Juglans regia
Class	miRNA
Genome position	NW_017436816.1:20396-20569 [+]
Reference genome	wgs.5d
Source	SRR1170967;SRR1170968
Length	22
Mature sequence(if miRNA)	153 - UUUGGAUUGAAGGGAGCUCUAC - 174
Stem-loop(if miRNA)	--          GA       UG        U   --      AUU     G     U    G UU  A   C      -------    UC   AGAGCUCCUU  AGUCCAA  GAGGGUCU GCU  GGGUGG   GAGCU CCGAG UAUG A  CC CAG CCUAUC       CCUU  A   ||||||||||  |||||||  |||||||| |||  ||||||   ||||| ||||| |||| |  || ||| ||||||       ||||   UCUCGAGGGA  UUAGGUU  UUCCUAGA UGA  UCCAUU   UUCGA GGCUC AUAC U  GG GUU GGAUAG       GGAG  U CA          AG       UG        C   UA      -GC     G     U    G UC  C   C      UUUUAUC    UU
Stem-loop sequence	AGAGCUCCUUGAAGUCCAAUGGAGGGUCUUGCUGGGUGGAUUGAGCUGCCGAGUUAUGGAUUCCACAGCCCUAUCCCUUUCAUUUGAGGCUAUUUUGAUAGGCUUGCGGCUUGCAUAUCUCGGGAGCUUCGUUACCUAUAGUCAGAUCCUUGUUUGGAUUGAAGGGAGCUCUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018974995.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   ****|||||||||||||||||| targets:727   UGCCAGCUCCCUUCAAUCCAAA   748 Target Full Sequence	1.0	PREDICTED: Juglans regia uncharacterized LOC108998443 (LOC108998443), mRNA	NA	coding protein	psRNATarget
XM_018982292.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   |||||||**||||||||||||| targets:898   GUAGAGCAACCUUCAAUCCAAA   919 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109003943 (LOC109003943), mRNA	NA	coding protein	psRNATarget
XM_018949776.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|**|||||||||||||||||= targets:787   AUUCAGCUCCCUUCAAUCCAAG   808 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC108979172 (LOC108979172), mRNA	NA	coding protein	psRNATarget
XM_018968382.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   ||*||||**||||||||||||| targets:940   GUCGAGCAACCUUCAAUCCAAA   961 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC108993458 (LOC108993458), mRNA	NA	coding protein	psRNATarget
XM_018992937.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *||||*|||=|||||||||||| targets:557   UUAGAUCUCUCUUCAAUCCAAA   578 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized mitochondrial protein AtMg00310-like (LOC109011648), mRNA	NA	coding protein	psRNATarget
XM_018997954.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *||||*|||=|||||||||||| targets:773   UUAGAUCUCUCUUCAAUCCAAA   794 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized mitochondrial protein AtMg00310-like (LOC109015483), partial mRNA	NA	coding protein	psRNATarget
XM_018986336.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|||||||*=|||||||||||| targets:164   UUAGAGCUAUCUUCAAUCCAAA   185 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109006907 (LOC109006907), mRNA	NA	coding protein	psRNATarget
XM_018997305.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *||||*|||=|||||||||||| targets:707   UUAGAUCUCUCUUCAAUCCAAA   728 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109014810 (LOC109014810), mRNA	NA	coding protein	psRNATarget
XM_018960076.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *||||*|||=|||||||||||| targets:2036   UUAGAUCUCUCUUCAAUCCAAA   2057 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108987197 (LOC108987197), mRNA	NA	coding protein	psRNATarget
XM_018970398.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   **|||*|||=|||||||||||| targets:1586   UAAGAUCUCUCUUCAAUCCAAA   1607 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108994957 (LOC108994957), mRNA	NA	coding protein	psRNATarget
XM_018993822.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1247   UUGGAGCUCCCUUCACUCCAAU   1268 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB (LOC109012280), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018993820.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1261   UUGGAGCUCCCUUCACUCCAAU   1282 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB (LOC109012280), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018993821.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1265   UUGGAGCUCCCUUCACUCCAAU   1286 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB (LOC109012280), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018993818.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1296   UUGGAGCUCCCUUCACUCCAAU   1317 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB (LOC109012280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018977582.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1668   UUGGAGCUCCCUUCACUCCAAU   1689 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB-like (LOC109000626), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018977581.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1668   UUGGAGCUCCCUUCACUCCAAU   1689 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB-like (LOC109000626), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018978191.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1867   UUGGAGCUCCCUUCACUCCAAU   1888 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB-like (LOC109001069), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018978190.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||||||||||*|||||* targets:1884   UUGGAGCUCCCUUCACUCCAAU   1905 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor GAMYB-like (LOC109001069), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018982954.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *||||||*||||||||*||||| targets:385   AUAGAGCCCCCUUCAAACCAAA   406 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109004416 (LOC109004416), mRNA	NA	coding protein	psRNATarget
XM_019004238.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   ***||||||=|||||||||||* targets:1946   UCCGAGCUCUCUUCAAUCCAAU   1967 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109021580 (LOC109021580), mRNA	NA	coding protein	psRNATarget
XM_018994482.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||*||||||||*||||| targets:828   AUGGAGCCCCCUUCAAACCAAA   849 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109012693 (LOC109012693), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018994475.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||*||||||||*||||| targets:1086   AUGGAGCCCCCUUCAAACCAAA   1107 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109012693 (LOC109012693), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018994466.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||*||||||||*||||| targets:1267   AUGGAGCCCCCUUCAAACCAAA   1288 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109012693 (LOC109012693), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967139.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   *|=||||*||||||||*||||| targets:1372   AUGGAGCCCCCUUCAAACCAAA   1393 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992536 (LOC108992536), mRNA	NA	coding protein	psRNATarget
XM_018956156.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   **=|||||||||||||*||||* targets:1507   CAGGAGCUCCCUUCAAACCAAU   1528 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor MYB86 (LOC108984259), mRNA	NA	coding protein	psRNATarget
XM_018953448.1	ncRNA:22   CAUCUCGAGGGAAGUUAGGUUU   1   **|||||*||||||||*||||| targets:1257   ACAGAGCCCCCUUCAAACCAAA   1278 Target Full Sequence	2.5	PREDICTED: Juglans regia pre-mRNA-splicing factor CEF1 (LOC108982148), mRNA	NA	coding protein	psRNATarget