ncRNA ID | novel_jre_miR900 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017462745.1:45-97 [-] |
Reference genome | wgs.5d |
Source | SRR1170967;SRR1170969 |
Length | 19 |
Mature sequence(if miRNA) | 1 - CCCGGGUUGGAGUCAUGCC - 19 |
Stem-loop(if miRNA) |
--     -A     G   AU  C   G   CGUGG  CCGAU CGG  UG GGC G   |||||  ||||| |||  || |||   GUACU  GGUUG GCC  AC CCG C CC     GA     G   CG  C   C |
Stem-loop sequence | CGUGGACCGAUGCGGAUUGCGGCGGCCGCCCCAGCCCGGGUUGGAGUCAUGCC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018976326.1 |
|
2.5 | PREDICTED: Juglans regia TPR repeat-containing thioredoxin TTL1-like (LOC108999436), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_018976325.1 |
|
2.5 | PREDICTED: Juglans regia TPR repeat-containing thioredoxin TTL1-like (LOC108999436), transcript variant X1, mRNA | NA | coding protein | psRNATarget |