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BaseInfo

ncRNA ID novel_jre_miR900
Species Juglans regia
Class miRNA
Genome position NW_017462745.1:45-97 [-]
Reference genome wgs.5d
Source SRR1170967;SRR1170969
Length 19
Mature sequence(if miRNA) 1 - CCCGGGUUGGAGUCAUGCC - 19
Stem-loop(if miRNA) --     -A     G   AU  C   G
  CGUGG  CCGAU CGG  UG GGC G
  |||||  ||||| |||  || |||
  GUACU  GGUUG GCC  AC CCG C
CC     GA     G   CG  C   C
Stem-loop sequence CGUGGACCGAUGCGGAUUGCGGCGGCCGCCCCAGCCCGGGUUGGAGUCAUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018976326.1
ncRNA:19   CCGUACUGAGGUUGGGCCC   1
  |||||||||||||*||||*
targets:955   GGCAUGACUCCAAACCGGA   973

2.5 PREDICTED: Juglans regia TPR repeat-containing thioredoxin TTL1-like (LOC108999436), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018976325.1
ncRNA:19   CCGUACUGAGGUUGGGCCC   1
  |||||||||||||*||||*
targets:986   GGCAUGACUCCAAACCGGA   1004

2.5 PREDICTED: Juglans regia TPR repeat-containing thioredoxin TTL1-like (LOC108999436), transcript variant X1, mRNA NA coding protein psRNATarget