ncRNA ID | novel_jre_miR894 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017440443.1:80890-81034 [+] |
Reference genome | wgs.5d |
Source | SRR1170967 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAGUCUCACACUCUGCACACCACU - 24 |
Stem-loop(if miRNA) |
--             -                AUA       U    C C            A      AUUUC   AAGUCUCACACUC UGCACACCACUUAAAA   UAUAUGA UUUA U UUUUAUCCUCAU UUUCAU     A   ||||||||||||| ||||||||||||||||   ||||||| |||| | |||||||||||| ||||||   UUCGGAGUGUGAG ACGUGUGGUGAAUUUU   AUAUACU AAAU A AAAAUGGGAGUA AAAGUA     U UA             G                --C       U    A A            C      CUUUA |
Stem-loop sequence | AAGUCUCACACUCUGCACACCACUUAAAAAUAUAUAUGAUUUUACUCUUUUAUCCUCAUAUUUCAUAUUUCAUAUUUCAUGAAACAUGAGGGUAAAAAAAUAAAUUCAUAUACUUUUAAGUGGUGUGCAGGAGUGUGAGGCUUAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018978883.1 |
|
2.5 | PREDICTED: Juglans regia telomerase reverse transcriptase (LOC109001539), transcript variant X11, mRNA | NA | coding protein | psRNATarget |