Search result

BaseInfo

ncRNA ID novel_jre_miR894
Species Juglans regia
Class miRNA
Genome position NW_017440443.1:80890-81034 [+]
Reference genome wgs.5d
Source SRR1170967
Length 24
Mature sequence(if miRNA) 1 - AAGUCUCACACUCUGCACACCACU - 24
Stem-loop(if miRNA) --             -                AUA       U    C C            A      AUUUC
  AAGUCUCACACUC UGCACACCACUUAAAA   UAUAUGA UUUA U UUUUAUCCUCAU UUUCAU     A
  ||||||||||||| ||||||||||||||||   ||||||| |||| | |||||||||||| ||||||
  UUCGGAGUGUGAG ACGUGUGGUGAAUUUU   AUAUACU AAAU A AAAAUGGGAGUA AAAGUA     U
UA             G                --C       U    A A            C      CUUUA
Stem-loop sequence AAGUCUCACACUCUGCACACCACUUAAAAAUAUAUAUGAUUUUACUCUUUUAUCCUCAUAUUUCAUAUUUCAUAUUUCAUGAAACAUGAGGGUAAAAAAAUAAAUUCAUAUACUUUUAAGUGGUGUGCAGGAGUGUGAGGCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018978883.1
ncRNA:24   UCACCACACGUCUCACACUCUGAA   1
  ||||||||||=||||*||||||||
targets:86   AGUGGUGUGCGGAGUUUGAGACUU   109

2.5 PREDICTED: Juglans regia telomerase reverse transcriptase (LOC109001539), transcript variant X11, mRNA NA coding protein psRNATarget