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BaseInfo

ncRNA ID	novel_jre_miR883
Species	Juglans regia
Class	miRNA
Genome position	NW_017443277.1:440087-440271 [+]
Reference genome	wgs.5d
Source	SRR1170966
Length	24
Mature sequence(if miRNA)	1 - AAAAUGAUUGUACGAUACUUGCGC - 24
Stem-loop(if miRNA)	--       U             C      -AC     CAACUAUCAUUU   AAAGAGUUAUUCACGCAUCAUUUUUCAUAAAAUAAUAUUAGGA   AAAAUGA UGUACGAUACUUG GCACUC   GACUA            CUC                                           A   ||||||| ||||||||||||| ||||||   |||||            |||   UUUUAUU ACGUGCUGUGAAC CGUGAG   CUGAU            CGU                                           U AG       U             A      GUA     ------AUACAU   AAUGAUUUUUUUAUUAUUAUUAUUUUUACAUAUUAGAAUGGCC
Stem-loop sequence	AAAAUGAUUGUACGAUACUUGCGCACUCACGACUACAACUAUCAUUUCUCAAAGAGUUAUUCACGCAUCAUUUUUCAUAAAAUAAUAUUAGGAAUCCGGUAAGAUUAUACAUUUUUAUUAUUAUUAUUUUUUUAGUAAUGCUACAUAUAGUCAUGGAGUGCACAAGUGUCGUGCAUUUAUUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018989147.1	ncRNA:24   CGCGUUCAUAGCAUGUUAGUAAAA   1   *=|=|||*|||*|||||||||||| targets:2740   AUGUAAGCAUCAUACAAUCAUUUU   2763 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018989146.1	ncRNA:24   CGCGUUCAUAGCAUGUUAGUAAAA   1   *=|=|||*|||*|||||||||||| targets:2744   AUGUAAGCAUCAUACAAUCAUUUU   2767 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018989145.1	ncRNA:24   CGCGUUCAUAGCAUGUUAGUAAAA   1   *=|=|||*|||*|||||||||||| targets:2762   AUGUAAGCAUCAUACAAUCAUUUU   2785 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018956793.1	ncRNA:24   CGCGUUCAUAGCAUGUUAGUAAAA   1   ||*=||*|=|=||||||||||||| targets:1326   GCAUAAAUGUUGUACAAUCAUUUU   1349 Target Full Sequence	3.0	PREDICTED: Juglans regia probable long-chain-alcohol O-fatty-acyltransferase 5 (LOC108984746), mRNA	NA	coding protein	psRNATarget