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BaseInfo

ncRNA ID	novel_jre_miR878
Species	Juglans regia
Class	miRNA
Genome position	NW_017442989.1:264403-264543 [-]
Reference genome	wgs.5d
Source	SRR1170966
Length	24
Mature sequence(if miRNA)	118 - ACCGUGAAGUGCGUAAUCGUCGCG - 141
Stem-loop(if miRNA)	--        G                                 ----------           UAU       U   ACCGUGAA UGCGUAAUCGUCGCGUAAUCGCUUUGAAAAAGA          GUGAGAUCCAC   UAAAAAA U   |||||||| |||||||||||||||||||||||||||||||||          |||||||||||   ||||||| A   UGGCACUU AUGCAUUGGCGGCGCAUUAGCGAAACUUUUUUU          UACUCUGGGUG   AUUUUUU A GU        A                                 ACUUAUUUUG           --U       U
Stem-loop sequence	ACCGUGAAGUGCGUAAUCGUCGCGUAAUCGCUUUGAAAAAGAGUGAGAUCCACUAUUAAAAAAUUAAUUUUUUUAUGUGGGUCUCAUGUUUUAUUCAUUUUUUUCAAAGCGAUUACGCGGCGGUUACGUAAUUCACGGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018951157.1	ncRNA:24   GCGCUGCUAAUGCGUGAAGUGCCA   1   =|||=||=|||||||||||||||| targets:4426   UGCGGCGGUUACGCACUUCACGGU   4449 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018951175.1	ncRNA:24   GCGCUGCUAAUGCGUGAAGUGCCA   1   =|||=||=|||||||||||||||| targets:4416   UGCGGCGGUUACGCACUUCACGGU   4439 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018951165.1	ncRNA:24   GCGCUGCUAAUGCGUGAAGUGCCA   1   =|||=||=|||||||||||||||| targets:4333   UGCGGCGGUUACGCACUUCACGGU   4356 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018951169.1	ncRNA:24   GCGCUGCUAAUGCGUGAAGUGCCA   1   =|||=||=|||||||||||||||| targets:4044   UGCGGCGGUUACGCACUUCACGGU   4067 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X3, mRNA	NA	coding protein	psRNATarget