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BaseInfo

ncRNA ID	novel_jre_miR843
Species	Juglans regia
Class	miRNA
Genome position	NW_017389687.1:126188-126362 [+]
Reference genome	wgs.5d
Source	SRR1170966
Length	24
Mature sequence(if miRNA)	152 - ACGACUGUAUGUAGCAUUACUCGU - 175
Stem-loop(if miRNA)	--   A    A   U          -  C      U                       ---A  GAAUAAAUAAGGGACCCACAUGAA   GAG AAUG UAC UGCAGUCGUG AG GUGCAG CGCCGUGCAGUCGCUUUGAAAAA    AU                        A   ||| |||| ||| |||||||||| || |||||| |||||||||||||||||||||||    ||                        A   CUC UUAC AUG AUGUCAGCAC UU CGCGUU GCGGCACGUCAGCGAAACUUUUU    CC                        G UG   A    G   U          C  A      U                       CUCA  CCAGGUGAUAAUUUUUUAAUUAAA
Stem-loop sequence	GAGAAAUGAUACUUGCAGUCGUGAGCGUGCAGUCGCCGUGCAGUCGCUUUGAAAAAAAUGAAUAAAUAAGGGACCCACAUGAAAAGAAAUUAAUUUUUUAAUAGUGGACCCCACUCUUUUUCAAAGCGACUGCACGGCGUUUGCGCAUUCCACGACUGUAUGUAGCAUUACUCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018983529.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=|||||||||||||||||||||| targets:2294   AUGAGUAAUGCUACAUACAGUCGU   2317 Target Full Sequence	0.0	PREDICTED: Juglans regia UDP-sugar pyrophosphorylase-like (LOC109004826), mRNA	NA	coding protein	psRNATarget
XM_018960739.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   ***||||||||||||||||||||| targets:1137   UAUAGUAAUGCUACAUACAGUCGU   1160 Target Full Sequence	0.0	PREDICTED: Juglans regia uncharacterized protein At1g28695-like (LOC108987746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994468.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   *=*||||||||||||||||||||| targets:1419   UUUAGUAAUGCUACAUACAGUCGU   1442 Target Full Sequence	0.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018974968.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=||||||||=||||||||||||| targets:1084   AUGAGUAAUGUUACAUACAGUCGU   1107 Target Full Sequence	1.0	PREDICTED: Juglans regia uncharacterized LOC108998416 (LOC108998416), mRNA	NA	coding protein	psRNATarget
XM_018965430.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=|||||||||||=|||||||||| targets:2906   AUGAGUAAUGCUAUAUACAGUCGU   2929 Target Full Sequence	1.5	PREDICTED: Juglans regia putative disease resistance protein At1g50180 (LOC108991254), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018992679.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   ||*|||||||||||||||||||*| targets:2245   ACAAGUAAUGCUACAUACAGUCAU   2268 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018992680.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   ||*|||||||||||||||||||*| targets:2365   ACAAGUAAUGCUACAUACAGUCAU   2388 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018992677.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   ||*|||||||||||||||||||*| targets:2505   ACAAGUAAUGCUACAUACAGUCAU   2528 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018992678.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   ||*|||||||||||||||||||*| targets:2703   ACAAGUAAUGCUACAUACAGUCAU   2726 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized LOC109011462 (LOC109011462), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   *||*||||||||||*||||||||| targets:1239   CCGUGUAAUGCUACUUACAGUCGU   1262 Target Full Sequence	1.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   *||*||||||||||*||||||||| targets:1358   CCGUGUAAUGCUACUUACAGUCGU   1381 Target Full Sequence	1.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018981975.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=||||||||=||||||*|||||| targets:1118   AUGAGUAAUGUUACAUAAAGUCGU   1141 Target Full Sequence	2.5	PREDICTED: Juglans regia hydroxyphenylpyruvate reductase (LOC109003711), mRNA	NA	coding protein	psRNATarget
XM_018989147.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=|||||||*|||||||=|||||| targets:2711   AUGAGUAAUUCUACAUAUAGUCGU   2734 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018989146.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=|||||||*|||||||=|||||| targets:2715   AUGAGUAAUUCUACAUAUAGUCGU   2738 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018989145.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=|||||||*|||||||=|||||| targets:2733   AUGAGUAAUUCUACAUAUAGUCGU   2756 Target Full Sequence	2.5	PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967640.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   **||||||||=||||||=|||||| targets:2064   UAGAGUAAUGUUACAUAUAGUCGU   2087 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018967641.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   **||||||||=||||||=|||||| targets:2114   UAGAGUAAUGUUACAUAUAGUCGU   2137 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UG-CUCAUUACGAUGUAUGUCAGCA   1   ||-||||||||=|||||||||||*| targets:1880   ACUGAGUAAUGUUACAUACAGUCAU   1904 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018998000.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |=||*|||||=||||||*|||||| targets:668   AUGAAUAAUGUUACAUAAAGUCGU   691 Target Full Sequence	2.5	PREDICTED: Juglans regia hydroxyphenylpyruvate reductase-like (LOC109015528), partial mRNA	NA	coding protein	psRNATarget
XM_018985674.1	ncRNA:24   UGCUCAUUACGAUGUAUGUCAGCA   1   |**|||||||*||||||||*|||| targets:1669   AAAAGUAAUGAUACAUACAAUCGU   1692 Target Full Sequence	2.5	PREDICTED: Juglans regia proline iminopeptidase (LOC109006407), mRNA	NA	coding protein	psRNATarget