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BaseInfo

ncRNA ID	novel_jre_miR836
Species	Juglans regia
Class	miRNA
Genome position	NW_017389524.1:70024-70190 [+]
Reference genome	wgs.5d
Source	SRR1170966
Length	24
Mature sequence(if miRNA)	1 - AAUGCUACUCAUCAUCCUCACACU - 24
Stem-loop(if miRNA)	--AAUG     C     -  UC                 A      G G         AUUU       --A          UAC       CUACU AUCAU CC  ACACUACACACCAAUAU UGAUUU U AUUUUUGUC    UAUUUAA   CACACAUGUU   A       ||||| ||||| ||  ||||||||||||||||| |||||| | |||||||||    |||||||   ||||||||||       GAUGA UAGUA GG  UGUGGUGUGUGGUUGUA ACUAAA A UAAAAACAG    AUAAAUU   GUGUGUAUAA   C UUUUAA     A     A  GA                 C      A G         GAAU       CGC          CUA
Stem-loop sequence	AAUGCUACUCAUCAUCCUCACACUACACACCAAUAUAUGAUUUGUGAUUUUUGUCAUUUUAUUUAAACACACAUGUUUACACAUCAAUAUGUGUGCGCUUAAAUAUAAGGACAAAAAUGAAAAAUCACAUGUUGGUGUGUGGUGUAGGGAAUGAUAAGUAGAAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018984884.1	ncRNA:24   UCAC-ACUCCUACUACUCAUCGUAA   1   =*||-||||||||||||||||*||| targets:1061   GAUGAUGAGGAUGAUGAGUAGGAUU   1085 Target Full Sequence	1.5	PREDICTED: Juglans regia 60S ribosomal protein L5-like (LOC109005829), mRNA	NA	coding protein	psRNATarget
XM_018982899.1	ncRNA:24   UCACACUCCUACUACUCAUCGUAA   1   =||*||=|||||||||||||=||| targets:2041   GGUAUGGGGAUGAUGAGUAGUAUU   2064 Target Full Sequence	2.5	PREDICTED: Juglans regia probable polyol transporter 4 (LOC109004366), mRNA	NA	coding protein	psRNATarget
XM_018969344.1	ncRNA:24   UCACAC-UCCUACUACUCAUCGUAA   1   =|||||-|||||||||||||||||* targets:1276   GGUGUGUAGGAUGAUGAGUAGCAUA   1300 Target Full Sequence	3.0	PREDICTED: Juglans regia phosphoserine phosphatase, chloroplastic (LOC108994213), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018969342.1	ncRNA:24   UCACAC-UCCUACUACUCAUCGUAA   1   =|||||-|||||||||||||||||* targets:1335   GGUGUGUAGGAUGAUGAGUAGCAUA   1359 Target Full Sequence	3.0	PREDICTED: Juglans regia phosphoserine phosphatase, chloroplastic (LOC108994213), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018969343.1	ncRNA:24   UCACAC-UCCUACUACUCAUCGUAA   1   =|||||-|||||||||||||||||* targets:1584   GGUGUGUAGGAUGAUGAGUAGCAUA   1608 Target Full Sequence	3.0	PREDICTED: Juglans regia phosphoserine phosphatase, chloroplastic (LOC108994213), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969345.1	ncRNA:24   UCACAC-UCCUACUACUCAUCGUAA   1   =|||||-|||||||||||||||||* targets:1620   GGUGUGUAGGAUGAUGAGUAGCAUA   1644 Target Full Sequence	3.0	PREDICTED: Juglans regia phosphoserine phosphatase, chloroplastic (LOC108994213), transcript variant X4, mRNA	NA	coding protein	psRNATarget