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BaseInfo

ncRNA ID	novel_jre_miR828
Species	Juglans regia
Class	miRNA
Genome position	NW_017442867.1:225209-225253 [-]
Reference genome	wgs.5d
Source	SRR1168880
Length	20
Mature sequence(if miRNA)	1 - AAUCUCUCUCAAGGGCUUCU - 20
Stem-loop(if miRNA)	--        -CA   C     U   GAGUCUUU   AGG AUUGG U   ||||||||   ||| |||||   UUCGGGAA   UCU UAACU A UC        CUC   C     U
Stem-loop sequence	GAGUCUUUCAAGGCAUUGGUUAUUCAAUCUCUCUCAAGGGCUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018970766.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||*||||||||||||* targets:1276   AGAAGCACUUGAGAGAGAUA   1295 Target Full Sequence	2.0	PREDICTED: Juglans regia peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (LOC108995241), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018970765.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||*||||||||||||* targets:1276   AGAAGCACUUGAGAGAGAUA   1295 Target Full Sequence	2.0	PREDICTED: Juglans regia peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (LOC108995241), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018978906.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||=|||||||||||*| targets:1027   AGAAGCUCUUGAGAGAGAGU   1046 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_018978911.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||=|||||||||||*| targets:1027   AGAAGCUCUUGAGAGAGAGU   1046 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018978899.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||=|||||||||||*| targets:1027   AGAAGCUCUUGAGAGAGAGU   1046 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018978893.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||=|||||||||||*| targets:1027   AGAAGCUCUUGAGAGAGAGU   1046 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018978884.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||=|||||||||||*| targets:1027   AGAAGCUCUUGAGAGAGAGU   1046 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018978873.1	ncRNA:20   UCUUCGGGAACUCUCUCUAA   1   ||||||=|||||||||||*| targets:1027   AGAAGCUCUUGAGAGAGAGU   1046 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109001537 (LOC109001537), transcript variant X1, mRNA	NA	coding protein	psRNATarget