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BaseInfo

ncRNA ID	novel_jre_miR824
Species	Juglans regia
Class	miRNA
Genome position	NW_017389229.1:1504-1614 [+]
Reference genome	wgs.5d
Source	SRR1170966
Length	24
Mature sequence(if miRNA)	88 - AAAAUGAUAUGUUUUUAAAUGGGU - 111
Stem-loop(if miRNA)	--   C                   -      -----UACCA  GUA     A   AUU   UCA UUAAAAACAUAUCAUUUUA CUUUUU          AC   AUGAA AUG   C   ||| ||||||||||||||||||| ||||||          ||   ||||| |||   GGU AAUUUUUGUAUAGUAAAAU GAAAAA          UG   UAUUU UAC   C UG   A                   A      UAAGAUACAA  -AA     A   AGA
Stem-loop sequence	UCACUUAAAAACAUAUCAUUUUACUUUUUUACCAACGUAAUGAAAAUGAUUCCAGACAUAUUUAUAAGUAACAUAGAAUAAAAAGAUAAAAUGAUAUGUUUUUAAAUGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018995646.1	ncRNA:24   UGGGUAAAUUUUUGUAUAGUAAAA   1   |=|=||||||||||||=||||||| targets:526   AUCUAUUUAAAAACAUGUCAUUUU   549 Target Full Sequence	1.5	PREDICTED: Juglans regia RNA-binding protein CP33, chloroplastic-like (LOC109013524), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018995633.1	ncRNA:24   UGGGUAAAUUUUUGUAUAGUAAAA   1   |=|=||||||||||||=||||||| targets:1078   AUCUAUUUAAAAACAUGUCAUUUU   1101 Target Full Sequence	1.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018995636.1	ncRNA:24   UGGGUAAAUUUUUGUAUAGUAAAA   1   |==|||||||||||||=||||||| targets:1206   AUUCAUUUAAAAACAUGUCAUUUU   1229 Target Full Sequence	1.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018995634.1	ncRNA:24   UGGGUAAAUUUUUGUAUAGUAAAA   1   |==|||||||||||||=||||||| targets:1280   AUUCAUUUAAAAACAUGUCAUUUU   1303 Target Full Sequence	1.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018953144.1	ncRNA:24   UGGG-UAAAUUUUUGUAUAGUAAAA   1   ||||-|**||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	2.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018953146.1	ncRNA:24   UGGG-UAAAUUUUUGUAUAGUAAAA   1   ||||-|**||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	2.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018953139.1	ncRNA:24   UGGG-UAAAUUUUUGUAUAGUAAAA   1   ||||-|**||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	2.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018953143.1	ncRNA:24   UGGG-UAAAUUUUUGUAUAGUAAAA   1   ||||-|**||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	2.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X3, mRNA	NA	coding protein	psRNATarget