Search result

BaseInfo

ncRNA ID	novel_jre_miR803
Species	Juglans regia
Class	miRNA
Genome position	NW_017388909.1:131279-131450 [-]
Reference genome	wgs.5d
Source	SRR1170965
Length	24
Mature sequence(if miRNA)	1 - AGUGUGGAGUGUGGAGUGUGUUGG - 24
Stem-loop(if miRNA)	CUAACA UC                    A    U        U       -     UUAUUAAAUAUUUAUUUUAUGAAUAAUGAAU       C  CACACUCCACAUUCCAUAUU UUUU AAUUUUUA UAUUUUU UUCUU                               A       |  |||||||||||||||||||| |||| |||||||| ||||||| |||||       G  GUGUGAGGUGUGAGGUGUGA AAAA UUAAAAAU AUAAAAA UUUUU                               A -----G UU                    A    U        U       A     AAAAAAAAACUCAAAUAAGAAAAAUUUAAUA
Stem-loop sequence	CUAACACUCCACACUCCACAUUCCAUAUUAUUUUUAAUUUUUAUUAUUUUUUUCUUUUAUUAAAUAUUUAUUUUAUGAAUAAUGAAUAAAUAAUUUAAAAAGAAUAAACUCAAAAAAAAAUUUUUAAAAAAUAUUAAAAAUUUAAAAAAGUGUGGAGUGUGGAGUGUGUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018959423.1	ncRNA:24   GGUUGUGUGAGGUGUGAGGUGUGA   1   *|||*||||||||||||||||||| targets:1870   ACAAAACACUCCACACUCCACACU   1893 Target Full Sequence	0.0	PREDICTED: Juglans regia high-affinity nitrate transporter 3.1-like (LOC108986715), mRNA	NA	coding protein	psRNATarget
XM_018995619.1	ncRNA:24   GGUU-GU-GUGAGGUGUGAGGUGUGA   1   |=|*-||-|||||||||||||||||* targets:2025   CUAUUCAUCACUCCACACUCCACACA   2050 Target Full Sequence	3.0	PREDICTED: Juglans regia protein WVD2-like 4 (LOC109013507), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018995620.1	ncRNA:24   GGUU-GU-GUGAGGUGUGAGGUGUGA   1   |=|*-||-|||||||||||||||||* targets:2022   CUAUUCAUCACUCCACACUCCACACA   2047 Target Full Sequence	3.0	PREDICTED: Juglans regia protein WVD2-like 4 (LOC109013507), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018995621.1	ncRNA:24   GGUU-GU-GUGAGGUGUGAGGUGUGA   1   |=|*-||-|||||||||||||||||* targets:2019   CUAUUCAUCACUCCACACUCCACACA   2044 Target Full Sequence	3.0	PREDICTED: Juglans regia protein WVD2-like 4 (LOC109013507), transcript variant X3, mRNA	NA	coding protein	psRNATarget