Search result

BaseInfo

ncRNA ID novel_jre_miR796
Species Juglans regia
Class miRNA
Genome position NW_017388898.1:2295094-2295227 [-]
Reference genome wgs.5d
Source SRR1170965
Length 24
Mature sequence(if miRNA) 111 - AUCCCACAAAAUAAACCCAUAACC - 134
Stem-loop(if miRNA) --           -           CC        C  G    A C          GUAAAAC      UA
  AUCCCACAAAA UAAACCCAUAA  UGGCGUGG UU AUGU G AUGUUAGAUU       UGCUUU  U
  ||||||||||| |||||||||||  |||||||| || |||| | ||||||||||       ||||||
  UAGGGUGUUUU AUUUGGGUGUU  ACUGUAUC AA UAUA U UGCAAUCUAA       AUGAAA  U
UU           C           UA        A  G    C A          -------      UG
Stem-loop sequence AUCCCACAAAAUAAACCCAUAACCUGGCGUGGCUUGAUGUAGCAUGUUAGAUUGUAAAACUGCUUUUAUUGUAAAGUAAAUCUAACGUAUCAUAUGAAACUAUGUCAAUUUGUGGGUUUACUUUUGUGGGAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018966026.1
ncRNA:24   CCAAUACCCAAAUAAAACACCCUA   1
  **|*=|||||||||||*|||||||
targets:1775   AAUGGUGGGUUUAUUUGGUGGGAU   1798

1.5 PREDICTED: Juglans regia probable LRR receptor-like serine/threonine-protein kinase At2g16250 (LOC108991690), mRNA NA coding protein psRNATarget