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BaseInfo

ncRNA ID novel_jre_miR792
Species Juglans regia
Class miRNA
Genome position NW_017443548.1:118103-118245 [-]
Reference genome wgs.5d
Source SRR1170965
Length 24
Mature sequence(if miRNA) 120 - AAGCUUCACACUCUGCACACCACU - 143
Stem-loop(if miRNA) -      C   C   -               AA       U    C              A       UUUC
 AAGCUU ACA UCU GCACACCACUUAAAA  UAUGUGA UUUA UUUUUUAUUUUCAU UUUUAUA    A
 |||||| ||| ||| |||||||||||||||  ||||||| |||| |||||||||||||| |||||||
 UUUGGA UGU AGA UGUGUGGUGAAUUUU  AUACAUU AAAU AGAAAAUGGGAGUA AAAGUAU    U
A      A   A   A               -G       U    A              C       UUUA
Stem-loop sequence AAGCUUCACACUCUGCACACCACUUAAAAAAUAUGUGAUUUUACUUUUUUAUUUUCAUAUUUUAUAUUUCAUAUUUUAUGAAACAUGAGGGUAAAAGAAUAAAUUUACAUAGUUUUAAGUGGUGUGUAAGAAUGUAAGGUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018983270.1
ncRNA:24   UCACCACACGUCUCACACUUCGAA   1
  |**||||||=||||||||||||||
targets:3968   AACGGUGUGUAGAGUGUGAAGCUU   3991

1.0 PREDICTED: Juglans regia leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 (LOC109004640), mRNA NA coding protein psRNATarget