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BaseInfo

ncRNA ID	novel_jre_miR789
Species	Juglans regia
Class	miRNA
Genome position	NW_017388893.1:1664523-1664668 [+]
Reference genome	wgs.5d
Source	SRR1170965
Length	23
Mature sequence(if miRNA)	1 - CAACCGUGAAUUGUGUAACCGCC - 23
Stem-loop(if miRNA)	--          U                     C         ---A   AAUAAAACAUGGGACCCACAUGA   CAACCGUGAA UGUGUAACCGCCGCGUAAUCG UUUGAAAAA    AUG                       A   |||||||||| ||||||||||||||||||||| |||||||||    |||                       A   GUUGGCACUU ACGCAUUGGCGGCGCAUUAGC AAACUUUUU    CCC                       A AU          C                     A         CUCA   CAGGUGAUAAUUUUUUAAUUAAA
Stem-loop sequence	CAACCGUGAAUUGUGUAACCGCCGCGUAAUCGCUUUGAAAAAAAUGAAUAAAACAUGGGACCCACAUGAAAAAAAUUAAUUUUUUAAUAGUGGACCCCACUCUUUUUCAAAACGAUUACGCGGCGGUUACGCACUUCACGGUUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018969307.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   |||*||||||||||||||||||| targets:2155   GGCAGUUACACAAUUCACGGUUG   2177 Target Full Sequence	0.0	PREDICTED: Juglans regia DNAJ protein JJJ1 homolog (LOC108994190), mRNA	NA	coding protein	psRNATarget
XM_018966186.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   **||||||*=||||||||||||| targets:1323   UUCGGUUAGGCAAUUCACGGUUG   1345 Target Full Sequence	2.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC108991802), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018966185.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   **||||||*=||||||||||||| targets:1357   UUCGGUUAGGCAAUUCACGGUUG   1379 Target Full Sequence	2.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC108991802), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018951169.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   |||||||||=||*|||||||||| targets:4047   GGCGGUUACGCACUUCACGGUUG   4069 Target Full Sequence	2.5	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018951165.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   |||||||||=||*|||||||||| targets:4336   GGCGGUUACGCACUUCACGGUUG   4358 Target Full Sequence	2.5	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018951175.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   |||||||||=||*|||||||||| targets:4419   GGCGGUUACGCACUUCACGGUUG   4441 Target Full Sequence	2.5	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018951157.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   |||||||||=||*|||||||||| targets:4429   GGCGGUUACGCACUUCACGGUUG   4451 Target Full Sequence	2.5	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018996406.1	ncRNA:23   CCGCCAAUGUGUUAAGUGCCAAC   1   *|=||*|*|*||||||||||||| targets:1490   CGUGGCUUCUCAAUUCACGGUUG   1512 Target Full Sequence	3.0	PREDICTED: Juglans regia probable pectinesterase/pectinesterase inhibitor 17 (LOC109014084), mRNA	NA	coding protein	psRNATarget