Search result

BaseInfo

ncRNA ID	novel_jre_miR788
Species	Juglans regia
Class	miRNA
Genome position	NW_017443387.1:40773-40915 [-]
Reference genome	wgs.5d
Source	SRR1170965;SRR1168886
Length	24
Mature sequence(if miRNA)	1 - AUGAGAAUUGGGAUGAUGAAUAGC - 24
Stem-loop(if miRNA)	--           AUUU        -AAA   ----------        U          -   ---------------    U   UAUUCAUCAUC    UUCUCAUC    UCA          UGAUGUGA AUUAGAUGAU AGA               UUCA A   |||||||||||    ||||||||    |||          |||||||| |||||||||| |||               ||||   AUAAGUAGUAG    AAGAGUAG    AGU          ACUACAUU UAAUCUAUUA UCU               AAGU A CG           GGUU        GAGG   AUAGUAGAAU        U          A   UUAAUAAAUAAUAUA    G
Stem-loop sequence	UAUUCAUCAUCAUUUUUCUCAUCAAAUCAUGAUGUGAUAUUAGAUGAUAGAUUCAUAAGUGAAAUAUAAUAAAUAAUUUCUAAUUAUCUAAUUUUACAUCAUAAGAUGAUAUGAGGAGGAUGAGAAUUGGGAUGAUGAAUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018983133.1	ncRNA:24   CGAUAAGUAGUAGGGUUAAGAGUA   1   ||||*||||||||*|||||||||| targets:1605   GCUACUCAUCAUCACAAUUCUCAU   1628 Target Full Sequence	1.5	PREDICTED: Juglans regia GDSL esterase/lipase At3g27950-like (LOC109004557), mRNA	NA	coding protein	psRNATarget
XM_018951022.1	ncRNA:24   CGAUAAGUAGUAGGGUUAAGAGUA   1   |*||||*|||||=||||||||||| targets:28   GAUAUUGAUCAUUCCAAUUCUCAU   51 Target Full Sequence	2.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase BSL1-like (LOC108980171), mRNA	NA	coding protein	psRNATarget
XM_018992534.1	ncRNA:24   CGAUAAGUAGUAGGGUUAAGAGUA   1   *||*|||=**|||||||||||||| targets:147   UCUUUUCGAGAUCCCAAUUCUCAU   170 Target Full Sequence	3.0	PREDICTED: Juglans regia NAC domain-containing protein 17-like (LOC109011371), transcript variant X2, mRNA	NA	coding protein	psRNATarget