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BaseInfo

ncRNA ID novel_jre_miR750
Species Juglans regia
Class miRNA
Genome position NW_017429618.1:624-786 [+]
Reference genome wgs.5d
Source SRR1170965
Length 24
Mature sequence(if miRNA) 140 - CAUUCCACGAUUGUAUGUAGCAUU - 163
Stem-loop(if miRNA) --  A   U          -  C      U  C                    -   AAAUAAAUAA   AC    -CUG      AA
  UG UAC UGCAGUCGUG AG GUGCAG CG CGUGCAGUCGCUUUGAAAAA AGU          GGG  CCAC    AAAAGA  U
  || ||| |||||||||| || |||||| || |||||||||||||||||||| |||          |||  ||||    ||||||
  AC AUG AUGUUAGCAC UU CGCGUU GC GCACGUCAGCGAAACUUUUU UCA          CCC  GGUG    UUUUUU  U
UU  G   U          C  A      U  A                    C   ----------   CA    AUAA      AA
Stem-loop sequence UGAUACUUGCAGUCGUGAGCGUGCAGUCGCCGUGCAGUCGCUUUGAAAAAAGUAAAUAAAUAAGGGACCCACCUGAAAAGAAAUUAAUUUUUUAAUAGUGGACCCCACUCUUUUUCAAAGCGACUGCACGACGUUUGCGCAUUCCACGAUUGUAUGUAGCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018970092.1
ncRNA:24   UUACGAUGUAUGUUAGCACCUUAC   1
  ||||*||=|||||||||||||=||
targets:3718   AAUGAUAUAUACAAUCGUGGAGUG   3741

2.5 PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA NA coding protein psRNATarget