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BaseInfo

ncRNA ID	novel_jre_miR730
Species	Juglans regia
Class	miRNA
Genome position	NW_017389721.1:100131-100319 [+]
Reference genome	wgs.5d
Source	SRR1170965
Length	24
Mature sequence(if miRNA)	166 - UGAUUGUGAAAACAAAUGAGGCCU - 189
Stem-loop(if miRNA)	--                   A  AG UG    ------------   UG  U         --AG    --AAA      AAAA  UU  ---U       AUU   GCCUCGUUUGUUUUUACAA UA  A  AUAU            AUA  AG UGAGAUAAA    UUAA     UUAAAU    UA  GU    AUAAUAU   U   ||||||||||||||||||| ||  |  ||||            |||  || |||||||||    ||||     ||||||    ||  ||    |||||||   CGGAGUAAACAAAAGUGUU GU  U  UGUA            UGU  UU AUUUUAUUU    AGUU     AGUUUA    AU  CA    UAUUAUA   U UC                   A  AA GU    AAAGUUUAAGAG   GU  U         GUUA    GAAAA      --GG  UU  UUUU       AUU
Stem-loop sequence	GCCUCGUUUGUUUUUACAAAUAAGAUGAUAUAUAUGAGUUGAGAUAAAAGUUAAAAAUUAAAUAAAAUAUUGUUAUAAUAUAUUUUUUAAUAUUAUUUUUACUUUAGGAUUUGAAAAAGUUGAAUUGUUUAUUUUAUUUUGUGUGAGAAUUUGAAAAUGUUGUAAUGAUUGUGAAAACAAAUGAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018990650.1	ncRNA:24   UCCGGAGUAAACAAAAGUGUUAGU   1   |||||||*|||||||||||||||| targets:3711   AGGCCUCCUUUGUUUUCACAAUCA   3734 Target Full Sequence	1.0	PREDICTED: Juglans regia uncharacterized LOC109009964 (LOC109009964), mRNA	NA	coding protein	psRNATarget
XM_018978207.1	ncRNA:24   UCCGGAGUAAACAAAAGUGUUAGU   1   ||--||==|||||||||||||||| targets:1004   AG--CUUGUUUGUUUUCACAAUCA   1025 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109001081 (LOC109001081), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018978206.1	ncRNA:24   UCCGGAGUAAACAAAAGUGUUAGU   1   ||--||==|||||||||||||||| targets:1008   AG--CUUGUUUGUUUUCACAAUCA   1029 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109001081 (LOC109001081), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018985235.1	ncRNA:24   UCCGGAGUAAACAAAAGUGUUAGU   1   |||||||=||||||||||=||||| targets:1525   AGGCCUCGUUUGUUUUCAUAAUCA   1548 Target Full Sequence	2.5	PREDICTED: Juglans regia sialyltransferase-like protein 2 (LOC109006070), transcript variant X3, mRNA	NA	coding protein	psRNATarget