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BaseInfo

ncRNA ID novel_jre_miR710
Species Juglans regia
Class miRNA
Genome position NW_017388926.1:1408571-1408733 [+]
Reference genome wgs.5d
Source SRR1170964;SRR1170965
Length 24
Mature sequence(if miRNA) 140 - CAUUCCACGAUUGUAUGUAGCAUU - 163
Stem-loop(if miRNA) --  A   U          -  C      UUA                     -  C -AAUAAAUA   GAUUCACCUGAAA
  UG UAC UGCAGUCGUG AG GUGCAA   CCGUGCAGUCGUUUUGAAAAA AG G         AGG             A
  || ||| |||||||||| || ||||||   ||||||||||||||||||||| || |         |||
  AC AUG AUGUUAGCAC UU CACGUU   GGCACGUCAGCAAAACUUUUU UC C         UAA             G
UU  G   U          C  A      UGC                     C  A CCCAGAUGA   UUUUUUAAUUAAA
Stem-loop sequence UGAUACUUGCAGUCGUGAGCGUGCAAUUACCGUGCAGUCGUUUUGAAAAAAGCGAAUAAAUAAGGGAUUCACCUGAAAAGAAAUUAAUUUUUUAAUAGUAGACCCCACUCUUUUUCAAAACGACUGCACGGCGUUUGCACAUUCCACGAUUGUAUGUAGCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018970092.1
ncRNA:24   UUACGAUGUAUGUUAGCACCUUAC   1
  ||||*||=|||||||||||||=||
targets:3718   AAUGAUAUAUACAAUCGUGGAGUG   3741

2.5 PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA NA coding protein psRNATarget