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BaseInfo

ncRNA ID novel_jre_miR699
Species Juglans regia
Class miRNA
Genome position NW_017443414.1:1573-1702 [+]
Reference genome wgs.5d
Source SRR1170964;SRR1168883
Length 24
Mature sequence(if miRNA) 1 - ACACUCUGCACACCAUUUAAAAAA - 24
Stem-loop(if miRNA) A   --U  -      C         A   A        CUA      C      U     AUUUC
 CAC   CU GCACAC AUUUAAAAA UAU UGAUUUUA   UUUUAU UUCAUG UUCAU     A
 |||   || |||||| ||||||||| ||| ||||||||   |||||| |||||| |||||
 GUG   GA CGUGUG UAAAUUUUU AUA AUUGAAAU   AAAAUG GAGUAU AAGUA     U
A   UAU  A      U         -   C        AAG      U      U     CUUUA
Stem-loop sequence ACACUCUGCACACCAUUUAAAAAAUAUAUGAUUUUACUAUUUUAUCUUCAUGUUUCAUAUUUCAUAUUUCAUGAAUUAUGAGUGUAAAAGAAUAAAGUUACAUAUUUUUAAAUUGUGUGCAAGUAUGUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018983270.1
ncRNA:24   AAAAAAUUUACCACACGUCUCACA   1
  *||||||||*||||||=|||||||
targets:3961   GUUUUUAAACGGUGUGUAGAGUGU   3984

2.5 PREDICTED: Juglans regia leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 (LOC109004640), mRNA NA coding protein psRNATarget
XM_018959105.1
ncRNA:24   AAAAAAUUUACCACACGUCUCACA   1
  |*|*|||*||||||||*|||||||
targets:675   UGUAUUAUAUGGUGUGAAGAGUGU   698

2.5 PREDICTED: Juglans regia uncharacterized LOC108986477 (LOC108986477), mRNA NA coding protein psRNATarget