ncRNA ID | novel_jre_miR699 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017443414.1:1573-1702 [+] |
Reference genome | wgs.5d |
Source | SRR1170964;SRR1168883 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACACUCUGCACACCAUUUAAAAAA - 24 |
Stem-loop(if miRNA) |
A   --U  -      C         A   A        CUA      C      U     AUUUC  CAC   CU GCACAC AUUUAAAAA UAU UGAUUUUA   UUUUAU UUCAUG UUCAU     A  |||   || |||||| ||||||||| ||| ||||||||   |||||| |||||| |||||  GUG   GA CGUGUG UAAAUUUUU AUA AUUGAAAU   AAAAUG GAGUAU AAGUA     U A   UAU  A      U         -   C        AAG      U      U     CUUUA |
Stem-loop sequence | ACACUCUGCACACCAUUUAAAAAAUAUAUGAUUUUACUAUUUUAUCUUCAUGUUUCAUAUUUCAUAUUUCAUGAAUUAUGAGUGUAAAAGAAUAAAGUUACAUAUUUUUAAAUUGUGUGCAAGUAUGUGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_018983270.1 |
|
2.5 | PREDICTED: Juglans regia leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 (LOC109004640), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_018959105.1 |
|
2.5 | PREDICTED: Juglans regia uncharacterized LOC108986477 (LOC108986477), mRNA | NA | coding protein | psRNATarget |