Search result

BaseInfo

ncRNA ID novel_jre_miR698
Species Juglans regia
Class miRNA
Genome position NW_017388882.1:48938-49085 [-]
Reference genome wgs.5d
Source SRR1168880
Length 24
Mature sequence(if miRNA) 1 - AUGAUGAGAGUUGAGAUGAUGAAU - 24
Stem-loop(if miRNA) --                                      A  G       U      UGGAAAU  UU  UUA
  UCAUCAUCUUAACUUUCAUCAUCCUUCCAUCAUUUUAU AU UGAUAUU GAUGAU       UA  UA   C
  |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||       ||  ||
  AGUAGUAGAGUUGAGAGUAGUAGGAGGGUAGUAGGAUA UA ACUGUAA UUACUA       AU  AU   A
UA                                      C  A       U      UAAAAAU  UC  UUU
Stem-loop sequence UCAUCAUCUUAACUUUCAUCAUCCUUCCAUCAUUUUAUAAUGUGAUAUUUGAUGAUUGGAAAUUAUUUAUUACAUUUUACUUAUAAAAAUAUCAUUUAAUGUCAAAUCAUAGGAUGAUGGGAGGAUGAUGAGAGUUGAGAUGAUGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018983133.1
ncRNA:24   UAAGUAGUAGAGUUGAGAGUAGUA   1
  |*||||||||*|||=|||||||||
targets:1608   ACUCAUCAUCACAAUUCUCAUCAU   1631

2.5 PREDICTED: Juglans regia GDSL esterase/lipase At3g27950-like (LOC109004557), mRNA NA coding protein psRNATarget
XM_018950054.1
ncRNA:24   UAAGUAGUAGAGUUGAGAGUAGUA   1
  |****||||=||||=|||||||||
targets:1240   AAGGUUCAUUUCAAUUCUCAUCAU   1263

2.5 PREDICTED: Juglans regia protein CONTINUOUS VASCULAR RING 1-like (LOC108979380), mRNA NA coding protein psRNATarget