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BaseInfo

ncRNA ID novel_jre_miR696
Species Juglans regia
Class miRNA
Genome position NW_017440062.1:6606-6706 [+]
Reference genome wgs.5d
Source SRR1168880
Length 20
Mature sequence(if miRNA) 1 - UUAUCAUCUCUUCAUCAUCU - 20
Stem-loop(if miRNA) --       -   UU      -  CACU     A       CU   -U    C
  UUAUCAU CUC  CAUCAU CU    AUAUG UAUUAGA  AUA  UUUA U
  ||||||| |||  |||||| ||    ||||| |||||||  |||  ||||
  AAUAGUA GAG  GUAGUA GA    UAUAU AUAAUCU  UAU  AAAU U
AG       A   -U      A  -UAU     C       AU   CU    A
Stem-loop sequence UUAUCAUCUCUUCAUCAUCUCACUAUAUGAUAUUAGACUAUAUUUUACUUAUAAAUCUAUUAUCUAAUACUAUAUUAUAGAAUGAUGUGAGAAUGAUAAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018973763.1
ncRNA:20   UCUACUACUUCUCUACUAUU   1
  *|||||*|||||||||||=|
targets:802   CGAUGAGGAAGAGAUGAUGA   821

2.5 PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At3g46870-like (LOC108997457), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018956201.1
ncRNA:20   UCUACUACUUCUCUACUAUU   1
  |||*|||||||||*||||||
targets:2505   AGAAGAUGAAGAGUUGAUAA   2524

2.5 PREDICTED: Juglans regia uncharacterized LOC108984297 (LOC108984297), mRNA NA coding protein psRNATarget