Search result

BaseInfo

ncRNA ID	novel_jre_miR694
Species	Juglans regia
Class	miRNA
Genome position	NW_017442989.1:264402-264544 [-]
Reference genome	wgs.5d
Source	SRR1170964
Length	24
Mature sequence(if miRNA)	120 - AACCGUGAAGUGCGUAAUCGUCGC - 143
Stem-loop(if miRNA)	--         G                                 ----------           UAU       U   AACCGUGAA UGCGUAAUCGUCGCGUAAUCGCUUUGAAAAAGA          GUGAGAUCCAC   UAAAAAA U   ||||||||| |||||||||||||||||||||||||||||||||          |||||||||||   ||||||| A   UUGGCACUU AUGCAUUGGCGGCGCAUUAGCGAAACUUUUUUU          UACUCUGGGUG   AUUUUUU A UG         A                                 ACUUAUUUUG           --U       U
Stem-loop sequence	AACCGUGAAGUGCGUAAUCGUCGCGUAAUCGCUUUGAAAAAGAGUGAGAUCCACUAUUAAAAAAUUAAUUUUUUUAUGUGGGUCUCAUGUUUUAUUCAUUUUUUUCAAAGCGAUUACGCGGCGGUUACGUAAUUCACGGUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018951157.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4427   GCGGCGGUUACGCACUUCACGGUU   4450 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018951175.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4417   GCGGCGGUUACGCACUUCACGGUU   4440 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018951165.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4334   GCGGCGGUUACGCACUUCACGGUU   4357 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018951169.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   |||=||=||||||||||||||||| targets:4045   GCGGCGGUUACGCACUUCACGGUU   4068 Target Full Sequence	1.0	PREDICTED: Juglans regia protein NLP9 (LOC108980290), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018958453.1	ncRNA:24   CGCUGCUAAUGCGUGAAGUGCCAA   1   ||-|-|=|||=||||||||||||| targets:1166   GC-A-GGUUAUGCACUUCACGGUU   1187 Target Full Sequence	2.0	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At5g50390, chloroplastic (LOC108985966), mRNA	NA	coding protein	psRNATarget