Search result

BaseInfo

ncRNA ID	novel_jre_miR685
Species	Juglans regia
Class	miRNA
Genome position	NW_017440175.1:122004-122092 [+]
Reference genome	wgs.5d
Source	SRR1170964
Length	24
Mature sequence(if miRNA)	66 - AUCCAAAAUUUUCCGCUCGAGGUA - 89
Stem-loop(if miRNA)	--CA    C A   U         - --AA     --A      AAA     UUGA G GGA GAUUUUGGA C    ACAAU   UUCGUG   A     |||| | ||| ||||||||| |    |||||   ||||||   A     AGCU C CCU UUAAAACCU G    UGUUA   AGGUAC   A AUGG    - G   U         A ACUA     ACA      CUA
Stem-loop sequence	CAUUGACGAGGAUGAUUUUGGACAAACAAUAUUCGUGAAAAAAAUCCAUGGAACAAUUGUAUCAGAUCCAAAAUUUUCCGCUCGAGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018954871.1	ncRNA:24   AUGG-AGCUCGCCUUUUAAAACCUA   1   ||=*-|||||*|||||||||||||| targets:281   UAUGGUCGAGGGGAAAAUUUUGGAU   305 Target Full Sequence	1.0	PREDICTED: Juglans regia calcium-dependent protein kinase 26 (LOC108983287), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018954869.1	ncRNA:24   AUGG-AGCUCGCCUUUUAAAACCUA   1   ||=*-|||||*|||||||||||||| targets:281   UAUGGUCGAGGGGAAAAUUUUGGAU   305 Target Full Sequence	1.0	PREDICTED: Juglans regia calcium-dependent protein kinase 26 (LOC108983287), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018993054.1	ncRNA:24   AUGGAGCUCGCCUUUUAAAACCUA   1   ||||||*||||||||||*|||||| targets:301   UACCUCUAGCGGAAAAUCUUGGAU   324 Target Full Sequence	2.5	PREDICTED: Juglans regia uncharacterized LOC109011742 (LOC109011742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018989275.1	ncRNA:24   AUGGAGCUCGCCUUUUAAAACCUA   1   *|***=|||||||||||*|||||| targets:1456   AAGAAUGAGCGGAAAAUGUUGGAU   1479 Target Full Sequence	2.5	PREDICTED: Juglans regia probable receptor-like protein kinase At5g47070 (LOC109008965), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018989274.1	ncRNA:24   AUGGAGCUCGCCUUUUAAAACCUA   1   *|***=|||||||||||*|||||| targets:1596   AAGAAUGAGCGGAAAAUGUUGGAU   1619 Target Full Sequence	2.5	PREDICTED: Juglans regia probable receptor-like protein kinase At5g47070 (LOC109008965), transcript variant X1, mRNA	NA	coding protein	psRNATarget