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BaseInfo

ncRNA ID novel_jre_miR685
Species Juglans regia
Class miRNA
Genome position NW_017440175.1:122004-122092 [+]
Reference genome wgs.5d
Source SRR1170964
Length 24
Mature sequence(if miRNA) 66 - AUCCAAAAUUUUCCGCUCGAGGUA - 89
Stem-loop(if miRNA) --CA    C A   U         - --AA     --A      AAA
    UUGA G GGA GAUUUUGGA C    ACAAU   UUCGUG   A
    |||| | ||| ||||||||| |    |||||   ||||||   A
    AGCU C CCU UUAAAACCU G    UGUUA   AGGUAC   A
AUGG    - G   U         A ACUA     ACA      CUA
Stem-loop sequence CAUUGACGAGGAUGAUUUUGGACAAACAAUAUUCGUGAAAAAAAUCCAUGGAACAAUUGUAUCAGAUCCAAAAUUUUCCGCUCGAGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018954871.1
ncRNA:24   AUGG-AGCUCGCCUUUUAAAACCUA   1
  ||=*-|||||*||||||||||||||
targets:281   UAUGGUCGAGGGGAAAAUUUUGGAU   305

1.0 PREDICTED: Juglans regia calcium-dependent protein kinase 26 (LOC108983287), transcript variant X4, mRNA NA coding protein psRNATarget
XM_018954869.1
ncRNA:24   AUGG-AGCUCGCCUUUUAAAACCUA   1
  ||=*-|||||*||||||||||||||
targets:281   UAUGGUCGAGGGGAAAAUUUUGGAU   305

1.0 PREDICTED: Juglans regia calcium-dependent protein kinase 26 (LOC108983287), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018993054.1
ncRNA:24   AUGGAGCUCGCCUUUUAAAACCUA   1
  ||||||*||||||||||*||||||
targets:301   UACCUCUAGCGGAAAAUCUUGGAU   324

2.5 PREDICTED: Juglans regia uncharacterized LOC109011742 (LOC109011742), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989275.1
ncRNA:24   AUGGAGCUCGCCUUUUAAAACCUA   1
  *|***=|||||||||||*||||||
targets:1456   AAGAAUGAGCGGAAAAUGUUGGAU   1479

2.5 PREDICTED: Juglans regia probable receptor-like protein kinase At5g47070 (LOC109008965), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989274.1
ncRNA:24   AUGGAGCUCGCCUUUUAAAACCUA   1
  *|***=|||||||||||*||||||
targets:1596   AAGAAUGAGCGGAAAAUGUUGGAU   1619

2.5 PREDICTED: Juglans regia probable receptor-like protein kinase At5g47070 (LOC109008965), transcript variant X1, mRNA NA coding protein psRNATarget