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BaseInfo

ncRNA ID novel_jre_miR668
Species Juglans regia
Class miRNA
Genome position NW_017389943.1:52111-52240 [-]
Reference genome wgs.5d
Source SRR1170964
Length 24
Mature sequence(if miRNA) 1 - AUUACGCGGCGAUUAUGCAAUUCA - 24
Stem-loop(if miRNA) --AAG       C                         ----------           U  U      U
     UGCGUAA CGCCGCGUAAUCGCUUUGAAAAAGA          GUGGGAUCCAC AU AAAAAA U
     ||||||| |||||||||||||||||||||||||          ||||||||||| || |||||| A
     ACGUAUU GCGGCGCAUUAGCGAAACUUUUUUU          UACCCUGGGUG UA UUUUUU A
ACUUA       A                         ACUUAUUUUG           -  C      U
Stem-loop sequence AAGUGCGUAACCGCCGCGUAAUCGCUUUGAAAAAGAGUGGGAUCCACUAUUAAAAAAUUAAUUUUUUUCAUGUGGGUCCCAUGUUUUAUUCAUUUUUUUCAAAGCGAUUACGCGGCGAUUAUGCAAUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018987355.1
ncRNA:24   ACUUAACGUAUUAGCGGCGCAUUA   1
  ||||||||=|||*|||||||||||
targets:1838   UGAAUUGCGUAACCGCCGCGUAAU   1861

2.5 PREDICTED: Juglans regia 7-deoxyloganetin glucosyltransferase-like (LOC109007610), mRNA NA coding protein psRNATarget
XM_018953401.1
ncRNA:24   ACUUAACGUAUUAGCGGCGCAUUA   1
  ||||*|||=|||*|||||||||||
targets:2301   UGAAGUGCGUAACCGCCGCGUAAU   2324

2.5 PREDICTED: Juglans regia receptor protein kinase CLAVATA1-like (LOC108982113), mRNA NA coding protein psRNATarget