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BaseInfo

ncRNA ID	novel_jre_miR663
Species	Juglans regia
Class	miRNA
Genome position	NW_017389736.1:250947-251055 [+]
Reference genome	wgs.5d
Source	SRR1170964
Length	24
Mature sequence(if miRNA)	1 - AGAUAGAGAAUAGGUUGGCUGGCU - 24
Stem-loop(if miRNA)	--               U  -CU  C   AAA    U      AUCAAAA     CCG   AGAUAGAGAAUAGGU GG   GG UGG   UGAG GUAUUU       GGGGG   U   ||||||||||||||| ||   || |||   |||| ||||||       |||||   UCUAUUUUUUAUUCA CC   CC AUC   ACUC CAUGAG       CUCUC   C UU               -  UAU  A   ---    U      --AACUA     AUU
Stem-loop sequence	AGAUAGAGAAUAGGUUGGCUGGCUGGAAAUGAGUGUAUUUAUCAAAAGGGGGCCGUCUUACUCUCAUCAAGAGUACUCUCACUAACCUAUCCACUUAUUUUUUAUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018972517.1	ncRNA:24   UC---GGUCGGUUGGAUAAGAGAUAGA   1   ||---|=*|||||=|||*||||||||| targets:1402   AGAUUCUCGCCAAUCUACUCUCUAUCU   1428 Target Full Sequence	2.5	PREDICTED: Juglans regia cationic amino acid transporter 1-like (LOC108996561), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018972516.1	ncRNA:24   UC---GGUCGGUUGGAUAAGAGAUAGA   1   ||---|=*|||||=|||*||||||||| targets:1460   AGAUUCUCGCCAAUCUACUCUCUAUCU   1486 Target Full Sequence	2.5	PREDICTED: Juglans regia cationic amino acid transporter 1-like (LOC108996561), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018972515.1	ncRNA:24   UC---GGUCGGUUGGAUAAGAGAUAGA   1   ||---|=*|||||=|||*||||||||| targets:1483   AGAUUCUCGCCAAUCUACUCUCUAUCU   1509 Target Full Sequence	2.5	PREDICTED: Juglans regia cationic amino acid transporter 1-like (LOC108996561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018972518.1	ncRNA:24   UC---GGUCGGUUGGAUAAGAGAUAGA   1   ||---|=*|||||=|||*||||||||| targets:1483   AGAUUCUCGCCAAUCUACUCUCUAUCU   1509 Target Full Sequence	2.5	PREDICTED: Juglans regia cationic amino acid transporter 1-like (LOC108996561), transcript variant X4, mRNA	NA	coding protein	psRNATarget