Search result

BaseInfo

ncRNA ID	novel_jre_miR658
Species	Juglans regia
Class	miRNA
Genome position	NW_017389159.1:1808192-1808303 [-]
Reference genome	wgs.5d
Source	SRR1170964
Length	24
Mature sequence(if miRNA)	89 - AAUAAACUUACAAACUGAUGUGGU - 112
Stem-loop(if miRNA)	--AA            C              G   U      G    -UAAA  UC     UAAACUUACAAA UGAUGUGGUUUGAU UGA ACGUUA AUUG     AC  C     |||||||||||| |||||||||||||| ||| |||||| ||||     ||  U     AUUUGAAUGUUU ACUGCACUAAACUA ACU UGCGGU UAGC     UG  A UUUC            A              A   C      A    UGAAA  UU
Stem-loop sequence	AAUAAACUUACAAACUGAUGUGGUUUGAUGUGAUACGUUAGAUUGUAAAACUCCUAUUGUAAAGUCGAUAUGGCGUCUCAAAUCAAAUCACGUCAAUUUGUAAGUUUACUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_019002272.1	ncRNA:24   UGGUGUAGUCAAACAUUCAAAUAA   1   ===|=||||||||||||*|||||| targets:1838   GUUAUAUCAGUUUGUAAAUUUAUU   1861 Target Full Sequence	1.5	PREDICTED: Juglans regia exocyst complex component EXO70A1-like (LOC109019894), mRNA	NA	coding protein	psRNATarget
XM_018958578.1	ncRNA:24   UGGUGUAGUCAAACAUUCAAAUAA   1   |=||==||||||||||*||||||| targets:1073   AUCAUGUCAGUUUGUAUGUUUAUU   1096 Target Full Sequence	2.5	PREDICTED: Juglans regia transcription factor bHLH106 (LOC108986062), mRNA	NA	coding protein	psRNATarget
XM_018969076.1	ncRNA:24   UG-GUGUAGUCAAACAUUCAAAUAA   1   ||-|==||||*|||*|||||||||| targets:1207   ACUCGUAUCAAUUUUUAAGUUUAUU   1231 Target Full Sequence	2.5	PREDICTED: Juglans regia glucan endo-1,3-beta-glucosidase 14-like (LOC108994003), mRNA	NA	coding protein	psRNATarget