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BaseInfo

ncRNA ID	novel_jre_miR655
Species	Juglans regia
Class	miRNA
Genome position	NW_017389507.1:46485-46584 [-]
Reference genome	wgs.5d
Source	SRR1170963
Length	19
Mature sequence(if miRNA)	1 - GGAAUCUUGAUGAUGCUGC - 19
Stem-loop(if miRNA)	--                A  -   UUUU      UU G      -UGG  CC   AGCAUCAUCAAGAUUC CA AUC    AAGGCU  U UGGGGC    UC  U   |||||||||||||||| || |||    ||||||  | ||||||    ||   UCGUAGUAGUUCUAAG GU UAG    UUCCGG  A ACCUUG    AG  U CG                G  C   ---U      -C G      CUUA  CU
Stem-loop sequence	AGCAUCAUCAAGAUUCACAAUCUUUUAAGGCUUUUGUGGGGCUGGUCCCUUUCGAAUUCGUUCCAGACGGCCUUUGAUCUGGGAAUCUUGAUGAUGCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018952291.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||| targets:1465   GCAGCAUCAUCAGGAUUCC   1483 Target Full Sequence	1.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7-like (LOC108981197), mRNA	NA	coding protein	psRNATarget
XM_018958185.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||| targets:1739   GCAGCAUCAUCAGGAUUCC   1757 Target Full Sequence	1.5	PREDICTED: Juglans regia floral homeotic protein APETALA 2-like (LOC108985763), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018958184.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||| targets:1925   GCAGCAUCAUCAGGAUUCC   1943 Target Full Sequence	1.5	PREDICTED: Juglans regia floral homeotic protein APETALA 2-like (LOC108985763), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018989464.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||| targets:1909   GCAGCAUCAUCAGGAUUCC   1927 Target Full Sequence	1.5	PREDICTED: Juglans regia floral homeotic protein APETALA 2 (LOC109009102), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018989462.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||| targets:1912   GCAGCAUCAUCAGGAUUCC   1930 Target Full Sequence	1.5	PREDICTED: Juglans regia floral homeotic protein APETALA 2 (LOC109009102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018989461.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||| targets:1914   GCAGCAUCAUCAGGAUUCC   1932 Target Full Sequence	1.5	PREDICTED: Juglans regia floral homeotic protein APETALA 2 (LOC109009102), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018973255.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1594   GCAGCAUCAUCAGGAUUCU   1612 Target Full Sequence	2.5	PREDICTED: Juglans regia AP2-like ethylene-responsive transcription factor TOE3 (LOC108997119), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018973254.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1598   GCAGCAUCAUCAGGAUUCU   1616 Target Full Sequence	2.5	PREDICTED: Juglans regia AP2-like ethylene-responsive transcription factor TOE3 (LOC108997119), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018963352.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1715   GCAGCAUCAUCAGGAUUCU   1733 Target Full Sequence	2.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019005052.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1805   GCAGCAUCAUCAGGAUUCU   1823 Target Full Sequence	2.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7-like (LOC109022208), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018963351.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1743   GCAGCAUCAUCAGGAUUCU   1761 Target Full Sequence	2.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019005043.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1850   GCAGCAUCAUCAGGAUUCU   1868 Target Full Sequence	2.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7-like (LOC109022208), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018963354.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1795   GCAGCAUCAUCAGGAUUCU   1813 Target Full Sequence	2.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018963353.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   ||||||||||||=|||||= targets:1840   GCAGCAUCAUCAGGAUUCU   1858 Target Full Sequence	2.5	PREDICTED: Juglans regia ethylene-responsive transcription factor RAP2-7 (LOC108989660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018982509.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   *||*||||||||||||||* targets:831   UCAUCAUCAUCAAGAUUCA   849 Target Full Sequence	3.0	PREDICTED: Juglans regia protein ENDOSPERM DEFECTIVE 1-like (LOC109004092), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018982507.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   *||*||||||||||||||* targets:831   UCAUCAUCAUCAAGAUUCA   849 Target Full Sequence	3.0	PREDICTED: Juglans regia protein ENDOSPERM DEFECTIVE 1-like (LOC109004092), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018957683.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   *||*||||||||||||||* targets:821   UCAUCAUCAUCAAGAUUCA   839 Target Full Sequence	3.0	PREDICTED: Juglans regia protein ENDOSPERM DEFECTIVE 1-like (LOC108985396), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018957682.1	ncRNA:19   CGUCGUAGUAGUUCUAAGG   1   *||*||||||||||||||* targets:821   UCAUCAUCAUCAAGAUUCA   839 Target Full Sequence	3.0	PREDICTED: Juglans regia protein ENDOSPERM DEFECTIVE 1-like (LOC108985396), transcript variant X1, mRNA	NA	coding protein	psRNATarget