Search result

BaseInfo

ncRNA ID	novel_jre_miR646
Species	Juglans regia
Class	miRNA
Genome position	NW_017443603.1:1388593-1388758 [-]
Reference genome	wgs.5d
Source	SRR1170963
Length	24
Mature sequence(if miRNA)	143 - AAUGAUAGUUGCAGUUGUGAGUAC - 166
Stem-loop(if miRNA)	--    A  GU      UG  -   A     ACG  -A      C            A  AAUAAAUACGAAAUCCACA  AAAAUAAAAUAA   AAUG UA  UGCAGU  UG AGU CGCAA   AC  UGCAGU GUUUUGAAAAAA UG                   UG            U   |||| ||  ||||||  || ||| |||||   ||  |||||| |||||||||||| ||                   ||            U   UUAC AU  AUGUCA  AC UCA GCGUU   UG  ACGUCA CGAAACUUUUUU AC                   UC            U CA    A  GC      GU  C   C     -CA  GC      U            C  ------------------C  AAGUGAUAAUUU
Stem-loop sequence	AAUGAUAGUUGCAGUUGUGAGUACGCAAACGACAUGCAGUCGUUUUGAAAAAAAUGAAUAAAUACGAAAUCCACAUGAAAAUAAAAUAAUUUUUUAAUAGUGAACUCCACUUUUUUCAAAGCUACUGCACGGUACUUGCGCACUCCAUGACUGUACGUAACAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018970092.1	ncRNA:24   CAUGAGUGUUGACGUUGAUAGUAA   1   **=|*||||||||||||||||||| targets:3860   ACGCACACAACUGCAACUAUCAUU   3883 Target Full Sequence	0.0	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   CAUGAGUGUUGACGUUGAUAGUAA   1   **||||||||=||||||||||||| targets:1991   ACACUCACAAUUGCAACUAUCAUU   2014 Target Full Sequence	1.0	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   CAUG--AGUGUUGACGUUGAUAGUAA   1   ||=|--||||=||||||||||||||| targets:3295   GUGCAUUCACGACUGCAACUAUCAUU   3320 Target Full Sequence	1.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   CAUG--AGUGUUGACGUUGAUAGUAA   1   ||=|--||||=||||||||||||||| targets:3298   GUGCAUUCACGACUGCAACUAUCAUU   3323 Target Full Sequence	1.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   CAUGAGUGUUGACGUUGAUAGUAA   1   **|||||||||||=|||||||||| targets:1384   ACACUCACAACUGUAACUAUCAUU   1407 Target Full Sequence	1.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   CAUGAGUGUUGACGUUGAUAGUAA   1   **|||||||||||=|||||||||| targets:1503   ACACUCACAACUGUAACUAUCAUU   1526 Target Full Sequence	1.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget