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BaseInfo

ncRNA ID novel_jre_miR631
Species Juglans regia
Class miRNA
Genome position NW_017389666.1:627278-627376 [+]
Reference genome wgs.5d
Source SRR1170962
Length 24
Mature sequence(if miRNA) 1 - GUGUGAGAAUGAAUAGUGACUGAU - 24
Stem-loop(if miRNA) --   U A      A     A      --U     AAA   CAUCUCUUCA
  GUG G GAAUGA UAGUG CUGAUG   AUAAU   UCU          A
  ||| | |||||| ||||| ||||||   |||||   |||          A
  CAC C UUUAUU AUCAU GAUUAU   UAUUA   AGA          U
CU   - A      -     C      UCU     AAA   AAAUAAAUAU
Stem-loop sequence GUGUGAGAAUGAAUAGUGACUGAUGUAUAAUAAAUCUCAUCUCUUCAAAUUAUAAAUAAAAGAAAAAUUAUUCUUAUUAGCUACUAUUAUUUACCACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018987860.1
ncRNA:24   UAGUCAGUGAUAAGUAAGAGUGUG   1
  *|==*||*|||||||||||||||*
targets:263   CUUGUUCUCUAUUCAUUCUCACAA   286

2.0 PREDICTED: Juglans regia putative kinase-like protein TMKL1 (LOC109007948), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018982907.1
ncRNA:24   UAGUCAGUGAUAAGUAAGAGUGUG   1
  *|=|*||||||||||*|||||||=
targets:1507   CUUAAUCACUAUUCACUCUCACAU   1530

2.5 PREDICTED: Juglans regia microtubule-binding protein TANGLED-like (LOC109004374), mRNA NA coding protein psRNATarget