Search result

BaseInfo

ncRNA ID	novel_jre_miR624
Species	Juglans regia
Class	miRNA
Genome position	NW_017443552.1:1051198-1051348 [+]
Reference genome	wgs.5d
Source	SRR1170962;SRR1170963;SRR1170970;SRR1168881;SRR1168886
Length	24
Mature sequence(if miRNA)	128 - CUUGCGCACUCCACGACUGUAUGU - 151
Stem-loop(if miRNA)	--U                     GA CGC      CC         -    ----A  AAAUACGAGACCCACAUGA    UGCAGUCGUGGAGUGUGUAAG  C   GCAAUC  UUUGAAAAA AGUG     GU                   A    |||||||||||||||||||||  |   ||||||  ||||||||| ||||     ||    AUGUCAGCACCUCACGCGUUC  G   CGUUAG  AAACUUUUU UCAC     GU                   A UGU                     AC AUA      UA         C    CCCAA  AAUAAUUUUAUAAUCAAAA
Stem-loop sequence	UUGCAGUCGUGGAGUGUGUAAGGACCGCGCAAUCCCUUUGAAAAAAGUGAGUAAAUACGAGACCCACAUGAAAAAAACUAAUAUUUUAAUAAUGAACCCCACUCUUUUUCAAAAUGAUUGCAUAGCACUUGCGCACUCCACGACUGUAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |||||||||||||||||||||||| targets:1431   ACAUACAGUCGUGGAGUGCGCAAG   1454 Target Full Sequence	0.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018960739.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |||||||||||||||||*|||||| targets:1149   ACAUACAGUCGUGGAGUACGCAAG   1172 Target Full Sequence	1.5	PREDICTED: Juglans regia uncharacterized protein At1g28695-like (LOC108987746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019003364.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |=||=||||=|||||||*|||||| targets:1478   AUAUGCAGUUGUGGAGUACGCAAG   1501 Target Full Sequence	2.5	PREDICTED: Juglans regia polygalacturonase-like (LOC109020835), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019003363.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |=||=||||=|||||||*|||||| targets:1484   AUAUGCAGUUGUGGAGUACGCAAG   1507 Target Full Sequence	2.5	PREDICTED: Juglans regia polygalacturonase-like (LOC109020835), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019003362.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   |=||=||||=|||||||*|||||| targets:1523   AUAUGCAGUUGUGGAGUACGCAAG   1546 Target Full Sequence	2.5	PREDICTED: Juglans regia polygalacturonase-like (LOC109020835), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UGUAUGUCAGCACCUCACGCGUUC   1   ||||||||||*||||||||||*|| targets:1893   ACAUACAGUCAUGGAGUGCGCCAG   1916 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget