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BaseInfo

ncRNA ID	novel_jre_miR622
Species	Juglans regia
Class	miRNA
Genome position	NW_017442721.1:19069-19187 [-]
Reference genome	wgs.5d
Source	SRR1170962
Length	21
Mature sequence(if miRNA)	1 - CCGUGUUUCUCUGUAUAAGGA - 21
Stem-loop(if miRNA)	--      -    UAAU      C    -G      -C    A U   U   U  AG UUUC   UUUAUA AGAG    CACGGU GAGA  UAGCAG  AGAA G GAA GAA AA  C    U   |||||| ||||    |||||| ||||  ||||||  |||| | ||| ||| ||  |    U   GAAUAU UCUC    GUGCCA CUCU  AUCGUC  UCUU C CUU CUU UU  G    C AG      G    -UUU      A    GA      AC    - U   -   C  CU CUGC
Stem-loop sequence	UUUAUAAGAGUAAUCACGGUCGAGAGUAGCAGCAGAAAGUGAAUGAAUAAAGCUUUCUUCCGUCGUCUUCUUCUUCUCUUCUCACUGCUAAGUCUCAACCGUGUUUCUCUGUAUAAGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018957849.1	ncRNA:21   AGGAAUAUGUCUCUUUGUGCC   1   ||||||||||||||||||||| targets:196   UCCUUAUACAGAGAAACACGG   216 Target Full Sequence	0.0	PREDICTED: Juglans regia pentatricopeptide repeat-containing protein At1g63330-like (LOC108985519), mRNA	NA	coding protein	psRNATarget
XM_019002802.1	ncRNA:21   AGGAAUAUGUCUCUUUGUGCC   1   *||*|=|*||||||||||||| targets:607   GCCAUGUUCAGAGAAACACGG   627 Target Full Sequence	3.0	PREDICTED: Juglans regia protein FAR1-RELATED SEQUENCE 9-like (LOC109020357), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019002804.1	ncRNA:21   AGGAAUAUGUCUCUUUGUGCC   1   *||*|=|*||||||||||||| targets:880   GCCAUGUUCAGAGAAACACGG   900 Target Full Sequence	3.0	PREDICTED: Juglans regia protein FAR1-RELATED SEQUENCE 9-like (LOC109020357), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019002803.1	ncRNA:21   AGGAAUAUGUCUCUUUGUGCC   1   *||*|=|*||||||||||||| targets:1263   GCCAUGUUCAGAGAAACACGG   1283 Target Full Sequence	3.0	PREDICTED: Juglans regia protein FAR1-RELATED SEQUENCE 9-like (LOC109020357), transcript variant X2, mRNA	NA	coding protein	psRNATarget