Search result

BaseInfo

ncRNA ID novel_jre_miR609
Species Juglans regia
Class miRNA
Genome position NW_017442953.1:21935-22101 [+]
Reference genome wgs.5d
Source SRR1170961
Length 25
Mature sequence(if miRNA) 143 - AUUCCACGACUGUAUGUAGCAUUAA - 167
Stem-loop(if miRNA) --    A   U          -  C      U                       -    AAUAAAUAA   A  C  -CUG      AA
  AAUG UAC UGCAGUCGUG AG GUGCAG CGUCGUGCAGUCGCUUUGAAAAA AGUG         GGG CU AC    AAAAGA  U
  |||| ||| |||||||||| || |||||| ||||||||||||||||||||||| ||||         ||| || ||    ||||||
  UUAC AUG AUGUCAGCAC UU CGCGUU GCGGCACGUCAGCGAAACUUUUU UCAC         CCC GA UG    UUUUUU  U
AA    G   U          C  A      U                       C    ---------   A  -  AUAA      AA
Stem-loop sequence AAUGAUACUUGCAGUCGUGAGCGUGCAGUCGUCGUGCAGUCGCUUUGAAAAAAGUGAAUAAAUAAGGGACUCACCUGAAAAGAAAUUAAUUUUUUAAUAGUAGACCCCACUCUUUUUCAAAGCGACUGCACGGCGUUUGCGCAUUCCACGACUGUAUGUAGCAUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018960739.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *||||||||||||||||||||||=|
targets:1141   GUAAUGCUACAUACAGUCGUGGAGU   1165

1.5 PREDICTED: Juglans regia uncharacterized protein At1g28695-like (LOC108987746), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018994468.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *||||||||||||||||||||||=|
targets:1423   GUAAUGCUACAUACAGUCGUGGAGU   1447

1.5 PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA NA coding protein psRNATarget
XM_018983529.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *||||||||||||||||||||*|||
targets:2298   GUAAUGCUACAUACAGUCGUGAAAU   2322

1.5 PREDICTED: Juglans regia UDP-sugar pyrophosphorylase-like (LOC109004826), mRNA NA coding protein psRNATarget
XM_018989147.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *||||*|||||||=|||||||||||
targets:2715   GUAAUUCUACAUAUAGUCGUGGAAU   2739

1.5 PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X3, mRNA NA coding protein psRNATarget
XM_018989146.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *||||*|||||||=|||||||||||
targets:2719   GUAAUUCUACAUAUAGUCGUGGAAU   2743

1.5 PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018989145.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *||||*|||||||=|||||||||||
targets:2737   GUAAUUCUACAUAUAGUCGUGGAAU   2761

1.5 PREDICTED: Juglans regia U-box domain-containing protein 35-like (LOC109008882), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018967640.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *|||||=||||||=|||||||||||
targets:2068   GUAAUGUUACAUAUAGUCGUGGAAU   2092

2.5 PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X1, mRNA NA coding protein psRNATarget
XM_018967641.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *|||||=||||||=|||||||||||
targets:2118   GUAAUGUUACAUAUAGUCGUGGAAU   2142

2.5 PREDICTED: Juglans regia uncharacterized LOC108992921 (LOC108992921), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018974968.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *|||||=||||||||||||||*|||
targets:1088   GUAAUGUUACAUACAGUCGUGAAAU   1112

2.5 PREDICTED: Juglans regia uncharacterized LOC108998416 (LOC108998416), mRNA NA coding protein psRNATarget
XM_018971854.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *|||||||||=|||*||||||||||
targets:1524   GUAAUGCUACGUACUGUCGUGGAAU   1548

2.5 PREDICTED: Juglans regia UDP-glycosyltransferase 82A1 (LOC108996088), transcript variant X2, mRNA NA coding protein psRNATarget
XM_018971853.1
ncRNA:25   AAUUACGAUGUAUGUCAGCACCUUA   1
  *|||||||||=|||*||||||||||
targets:1542   GUAAUGCUACGUACUGUCGUGGAAU   1566

2.5 PREDICTED: Juglans regia UDP-glycosyltransferase 82A1 (LOC108996088), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.