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BaseInfo

ncRNA ID	novel_jre_miR605
Species	Juglans regia
Class	miRNA
Genome position	NW_017442525.1:45282-45403 [+]
Reference genome	wgs.5d
Source	SRR1170961
Length	24
Mature sequence(if miRNA)	99 - AUCAGUUUGUGAAUUUACUUUGUG - 122
Stem-loop(if miRNA)	-CA        C                   GA     UAU   AG    UAUAG       UA    AAAGUAAA UCACAAACUGAUGUGACUU  UAUAG   GUC  AUUG     UUACUUU  U    |||||||| |||||||||||||||||||  |||||   |||  ||||     |||||||    UUUCAUUU AGUGUUUGACUACACUGAA  GUAUC   UAG  UAAU     GAUGAAA  U GUG        A                   --     --U   -A    --UUA       UA
Stem-loop sequence	CAAAAGUAAACUCACAAACUGAUGUGACUUGAUAUAGUAUGUCAGAUUGUAUAGUUACUUUUAUUAUAAAGUAGAUUUAAUAGAUUCUAUGAAGUCACAUCAGUUUGUGAAUUUACUUUGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018961833.1	ncRNA:24   GUGUUUCAUUUAAGUGUUUGACUA   1   ***||||||||||||*|||||||| targets:4065   GUAAAAGUAAAUUCAGAAACUGAU   4088 Target Full Sequence	1.5	PREDICTED: Juglans regia putative disease resistance protein At3g14460 (LOC108988538), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018961825.1	ncRNA:24   GUGUUUCAUUUAAGUGUUUGACUA   1   ***||||||||||||*|||||||| targets:4180   GUAAAAGUAAAUUCAGAAACUGAU   4203 Target Full Sequence	1.5	PREDICTED: Juglans regia putative disease resistance protein At3g14460 (LOC108988538), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018970385.1	ncRNA:24   GUGUUUCAUUUAAGUGUUUGACUA   1   ***|||||||=||=|||||||||| targets:1178   GUAAAAGUAAGUUUACAAACUGAU   1201 Target Full Sequence	2.5	PREDICTED: Juglans regia carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like (LOC108994945), mRNA	NA	coding protein	psRNATarget
XM_018989558.1	ncRNA:24   GUGUUUCAUUUAAGUGUUUGACUA   1   ||||*|*||||*|||||||||||| targets:132   CACAUAAUAAACUCACAAACUGAU   155 Target Full Sequence	2.5	PREDICTED: Juglans regia GEM-like protein 7 (LOC109009172), mRNA	NA	coding protein	psRNATarget
XM_018961938.1	ncRNA:24   GUGU-UUCAUUUAAGUGUUUGACUA   1   =|||-||||||*|*||||||||||| targets:2284   UACACAAGUAAUUCCACAAACUGAU   2308 Target Full Sequence	2.5	PREDICTED: Juglans regia group II intron-encoded protein LtrA (LOC108988623), mRNA	NA	coding protein	psRNATarget