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BaseInfo

ncRNA ID novel_jre_miR596
Species Juglans regia
Class miRNA
Genome position NW_017388999.1:3792-3900 [-]
Reference genome wgs.5d
Source SRR1170960;SRR1170964
Length 21
Mature sequence(if miRNA) 89 - UUUGGCAUUCUGUCCACCUCC - 109
Stem-loop(if miRNA) --        U   U  A      --------    -     UGCAU          CU
  UUUGGCAU CUG CC CCUCCA        UGGC AGGCA     GCUUCAUGUU  U
  |||||||| ||| || ||||||        |||| |||||     ||||||||||
  AAGCUGUA GAC GG GGAGGU        GUCG UUUGU     UGAAGUACAA  G
UU        C   C  C      UAAUUAUA    C     UUAAU          UU
Stem-loop sequence UUUGGCAUUCUGUCCACCUCCAUGGCAGGCAUGCAUGCUUCAUGUUCUUGUUAACAUGAAGUUAAUUUGUUUCGCUGAUAUUAAUUGGAGGCGGCCAGCAUGUCGAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018990776.1
ncRNA:21   CCUCCACCUGUCUUACGGUUU   1
  ||||||*||||||||||||||
targets:1235   GGAGGUAGACAGAAUGCCAAA   1255

1.0 PREDICTED: Juglans regia F-box only protein 6-like (LOC109010064), mRNA NA coding protein psRNATarget
XM_018981234.1
ncRNA:21   CCUCCACCUGUCUUACGGUUU   1
  ||||||*||||||||||||||
targets:1367   GGAGGUUGACAGAAUGCCAAA   1387

1.0 PREDICTED: Juglans regia F-box only protein 6 (LOC109003194), mRNA NA coding protein psRNATarget