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BaseInfo

ncRNA ID novel_jre_miR587
Species Juglans regia
Class miRNA
Genome position NW_017462734.1:75-164 [+]
Reference genome wgs.5d
Source SRR1170960;SRR1170962;SRR1170963;SRR1170968;SRR1168880;SRR1170970;SRR1168881;SRR1168884;SRR1168886
Length 24
Mature sequence(if miRNA) 67 - AAUGACUAUUGUAUUGCCUUGGCC - 90
Stem-loop(if miRNA) --                     C                    G
  CCAAGGCAAUACAAUAGUCAU UUUAAGCAAUGUGGGACUUA U
  ||||||||||||||||||||| ||||||||||||||||||||
  GGUUCCGUUAUGUUAUCAGUA AAAUUCGUUACACUCUGAAU A
CC                     A                    G
Stem-loop sequence CCAAGGCAAUACAAUAGUCAUCUUUAAGCAAUGUGGGACUUAGUAGUAAGUCUCACAUUGCUUAAAAAUGACUAUUGUAUUGCCUUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018972167.1
ncRNA:24   CCGGUUCCGUUAUGUUAUCAGUAA   1
  *|**|||||||*|||||||||||*
targets:1129   UGGAAAGGCAAGACAAUAGUCAUG   1152

2.5 PREDICTED: Juglans regia trihelix transcription factor GT-2-like (LOC108996329), mRNA NA coding protein psRNATarget