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BaseInfo

ncRNA ID	novel_jre_miR581
Species	Juglans regia
Class	miRNA
Genome position	NW_017443575.1:599793-599963 [+]
Reference genome	wgs.5d
Source	SRR1170960
Length	24
Mature sequence(if miRNA)	1 - AAUGAUAGUUGCAGUCGUGAGUAC - 24
Stem-loop(if miRNA)	--    A  GU         -     C C   CGU  UG  A  AA         A    AAUAAAUUU   A  - -AC   AA     U   AAUG UA  UGCAGUCGU GAGUA G AAG   CG  CA UC  UUUGAGAAA AGUG         GAG CC C   AUA  AAAAA U   |||| ||  ||||||||| ||||| | |||   ||  || ||  ||||||||| ||||         ||| || |   |||  ||||| A   UUAC AU  AUGUUAGCA CUCAU C UUC   GC  GU AG  AAACUUUUU UCAC         CUC GG G   UAU  UUUUU A UA    A  GU         U     A A   AUU  GU  C  AG         C    ---------   A  C AUA   AA     U
Stem-loop sequence	AAUGAUAGUUGCAGUCGUGAGUACGCAAGCGUCGUGCAAUCAAUUUGAGAAAAAGUGAAUAAAUUUGAGACCCACAUAAAAAAAAUUAAUUUUUUAAUAUAUAGCGGACUCCACUCUUUUUCAAAGAGACUGUGCGUUACUUACAUACUCUACGAUUGUAUGUAACAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018952930.1	ncRNA:24   CAUG--AGUGCUGACGUUGAUAGUAA   1   ||=|--|||||||||||||||||||| targets:3295   GUGCAUUCACGACUGCAACUAUCAUU   3320 Target Full Sequence	0.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   CAUG--AGUGCUGACGUUGAUAGUAA   1   ||=|--|||||||||||||||||||| targets:3298   GUGCAUUCACGACUGCAACUAUCAUU   3323 Target Full Sequence	0.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018970092.1	ncRNA:24   CAUGAGUGCUGACGUUGAUAGUAA   1   **=|*|||*||||||||||||||| targets:3860   ACGCACACAACUGCAACUAUCAUU   3883 Target Full Sequence	1.0	PREDICTED: Juglans regia translation initiation factor eIF-2B subunit epsilon (LOC108994766), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   CAUGAGUGCUGACGUUGAUAGUAA   1   **||||||*|=||||||||||||| targets:1991   ACACUCACAAUUGCAACUAUCAUU   2014 Target Full Sequence	2.0	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   CAUGAGUGCUGACGUUGAUAGUAA   1   **||||||*||||=|||||||||| targets:1384   ACACUCACAACUGUAACUAUCAUU   1407 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   CAUGAGUGCUGACGUUGAUAGUAA   1   **||||||*||||=|||||||||| targets:1503   ACACUCACAACUGUAACUAUCAUU   1526 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget