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BaseInfo

ncRNA ID	novel_jre_miR573
Species	Juglans regia
Class	miRNA
Genome position	NW_017443266.1:1050175-1050301 [-]
Reference genome	wgs.5d
Source	SRR1170960;SRR1170962;SRR1168880
Length	24
Mature sequence(if miRNA)	104 - AAUAGACAAGCCUCAUACAAGCCU - 127
Stem-loop(if miRNA)	--          C            UU        C A   GU   A  AA       UA  UU   AAUAGACAAG CUCAUACAAGCC  UUGUAAAA A UAG  CCC CU  UAAAGAA  GU  U   |||||||||| ||||||||||||  |||||||| | |||  ||| ||  |||||||  ||  U   UUAUCUGUUC GAGUAUGUUCGG  AACAUUUU U AUC  GGG GG  AUUUUUU  CA  U GU          A            -U        U C   UG   C  -A       CA  UU
Stem-loop sequence	AAUAGACAAGCCUCAUACAAGCCUUUUGUAAAACAAUAGGUCCCACUAAUAAAGAAUAGUUUUUUUUACACUUUUUUAAGGCGGGGUCUACUUUUUUACAAUGGCUUGUAUGAGACUUGUCUAUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018953600.1	ncRNA:24   UCCGAACAUACUCCGAACAGAUAA   1   |*||||||||||*||||||||||| targets:63   AAGCUUGUAUGAAGCUUGUCUAUU   86 Target Full Sequence	1.5	PREDICTED: Juglans regia two-component response regulator ORR23-like (LOC108982277), mRNA	NA	coding protein	psRNATarget
XM_018950717.1	ncRNA:24   UCCGAACAUACUCCGAACAGAUAA   1   =||||||*|||||*|||||||||| targets:1430   GGGCUUGCAUGAGACUUGUCUAUU   1453 Target Full Sequence	2.5	PREDICTED: Juglans regia aminotransferase ALD1-like (LOC108979924), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018950714.1	ncRNA:24   UCCGAACAUACUCCGAACAGAUAA   1   =||||||*|||||*|||||||||| targets:1918   GGGCUUGCAUGAGACUUGUCUAUU   1941 Target Full Sequence	2.5	PREDICTED: Juglans regia aminotransferase ALD1-like (LOC108979924), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018950716.1	ncRNA:24   UCCGAACAUACUCCGAACAGAUAA   1   =||||||*|||||*|||||||||| targets:2036   GGGCUUGCAUGAGACUUGUCUAUU   2059 Target Full Sequence	2.5	PREDICTED: Juglans regia aminotransferase ALD1-like (LOC108979924), transcript variant X2, mRNA	NA	coding protein	psRNATarget