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BaseInfo

ncRNA ID	novel_jre_miR572
Species	Juglans regia
Class	miRNA
Genome position	NW_017443166.1:27770-27881 [+]
Reference genome	wgs.5d
Source	SRR1170960
Length	24
Mature sequence(if miRNA)	89 - AAAAUGAUAUGUUUUUAAGUGGGU - 112
Stem-loop(if miRNA)	--      U            G     AUUUUUAUCAU    UAUUCAUAAACAUGUCUG   UCACUU AAAAACAUGUCA UUUAC           AUUU                  G   |||||| |||||||||||| |||||           ||||   GGUGAA UUUUUGUAUAGU AAAUG           AAUG                  A UG      -            A     -------AAAA    AGUGCAUUAUUUUUACUA
Stem-loop sequence	UCACUUUAAAAACAUGUCAGUUUACAUUUUUAUCAUAUUUUAUUCAUAAACAUGUCUGGAAUCAUUUUUAUUACGUGAGUAAAAAAGUAAAAUGAUAUGUUUUUAAGUGGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018953144.1	ncRNA:24   UGGG-UGAAUUUUUGUAUAGUAAAA   1   ||||-||*||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	1.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018953146.1	ncRNA:24   UGGG-UGAAUUUUUGUAUAGUAAAA   1   ||||-||*||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	1.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018953139.1	ncRNA:24   UGGG-UGAAUUUUUGUAUAGUAAAA   1   ||||-||*||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	1.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018953143.1	ncRNA:24   UGGG-UGAAUUUUUGUAUAGUAAAA   1   ||||-||*||||||||||||||||| targets:154   ACCCUACCUAAAAACAUAUCAUUUU   178 Target Full Sequence	1.0	PREDICTED: Juglans regia V-type proton ATPase subunit G1-like (LOC108981892), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018995646.1	ncRNA:24   UGGGUGAAUUUUUGUAUAGUAAAA   1   |=|=|=||||||||||=||||||| targets:526   AUCUAUUUAAAAACAUGUCAUUUU   549 Target Full Sequence	2.5	PREDICTED: Juglans regia RNA-binding protein CP33, chloroplastic-like (LOC109013524), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018995633.1	ncRNA:24   UGGGUGAAUUUUUGUAUAGUAAAA   1   |=|=|=||||||||||=||||||| targets:1078   AUCUAUUUAAAAACAUGUCAUUUU   1101 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018995636.1	ncRNA:24   UGGGUGAAUUUUUGUAUAGUAAAA   1   |==||=||||||||||=||||||| targets:1206   AUUCAUUUAAAAACAUGUCAUUUU   1229 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018995634.1	ncRNA:24   UGGGUGAAUUUUUGUAUAGUAAAA   1   |==||=||||||||||=||||||| targets:1280   AUUCAUUUAAAAACAUGUCAUUUU   1303 Target Full Sequence	2.5	PREDICTED: Juglans regia 33 kDa ribonucleoprotein, chloroplastic (LOC109013517), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018983270.1	ncRNA:24   UG-GGUGAAUUUUUGUAUAGUAAAA   1   ||-|||||||=||||||||*||||| targets:3868   ACACCACUUAGAAACAUAUGAUUUU   3892 Target Full Sequence	2.5	PREDICTED: Juglans regia leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 (LOC109004640), mRNA	NA	coding protein	psRNATarget