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BaseInfo

ncRNA ID novel_jre_miR556
Species Juglans regia
Class miRNA
Genome position NW_017407383.1:372-455 [-]
Reference genome wgs.5d
Source SRR1170960;SRR1170964
Length 24
Mature sequence(if miRNA) 1 - AGCUGAGUCUAACAUCUAAACACU - 24
Stem-loop(if miRNA) --     U   -     UC CA       C           AA
  UGUUU GGU UUAGA  C  UUUGGAA UUGGACUGAAC  U
  ||||| ||| |||||  |  ||||||| |||||||||||
  ACAAA CUA AAUCU  G  GAAUUUU AAUCUGACUUG  U
UC     U   C     GA UC       -           AC
Stem-loop sequence UGUUUUGGUUUAGAUCCCAUUUGGAACUUGGACUGAACAAUUCAGUUCAGUCUAAUUUUAAGCUGAGUCUAACAUCUAAACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018960401.1
ncRNA:24   UCACAAAUCUACAAUCUGAGUCGA   1
  =||||||=|||||||||||=||||
targets:17   GGUGUUUGGAUGUUAGACUUAGCU   40

2.5 PREDICTED: Juglans regia uncharacterized LOC108987475 (LOC108987475), mRNA NA coding protein psRNATarget