ncRNA ID | ath-miR1888b |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr3:22537283-22537417 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 26 - UUAGGCUAAGAUUUGUGAAGA - 46 |
Stem-loop(if miRNA) |
                C      U     G          U            CUU         CU UAUUGGUGGUAUCUUA CCAAAU CUUAG CUAAGAUUUG GAAGAAAAGGCU   AUAUAAGAG  U |||||||||||||||| |||||| ||||| |||||||||| ||||||||||||   ||||||||| AUAAUCACCAUAGAAU GGUUUA GAAUU GAUUCUAAAC CUUCUUUUUUGA   UAUAUUCUC  U                 C      -     A          C            AUU         AU |
Stem-loop sequence | UAUUGGUGGUAUCUUACCCAAAUUCUUAGGCUAAGAUUUGUGAAGAAAAGGCUCUUAUAUAAGAGCUUUUACUCUUAUAUUUAAGUUUUUUCUUCCCAAAUCUUAGAUUAAGAUUUGGCUAAGAUACCACUAAUA |
1 | PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012). |