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BaseInfo

ncRNA ID ath-miR1888b
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:22537283-22537417 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 26 - UUAGGCUAAGAUUUGUGAAGA - 46
Stem-loop(if miRNA)                 C      U     G          U            CUU         CU
UAUUGGUGGUAUCUUA CCAAAU CUUAG CUAAGAUUUG GAAGAAAAGGCU   AUAUAAGAG  U
|||||||||||||||| |||||| ||||| |||||||||| ||||||||||||   |||||||||
AUAAUCACCAUAGAAU GGUUUA GAAUU GAUUCUAAAC CUUCUUUUUUGA   UAUAUUCUC  U
                C      -     A          C            AUU         AU
Stem-loop sequence UAUUGGUGGUAUCUUACCCAAAUUCUUAGGCUAAGAUUUGUGAAGAAAAGGCUCUUAUAUAAGAGCUUUUACUCUUAUAUUUAAGUUUUUUCUUCCCAAAUCUUAGAUUAAGAUUUGGCUAAGAUACCACUAAUA

Reference

1 PMID:21940835
"High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis";
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN;
Genome Res. 22:163-176(2012).