ncRNA ID | novel_jre_miR542 |
Species | Juglans regia |
Class | miRNA |
Genome position | NW_017389683.1:86440-86578 [-] |
Reference genome | wgs.5d |
Source | SRR1170960;SRR1170964;SRR1170966;SRR1170970;SRR1168883;SRR1168886 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACGGCACUUUCACACUCAUGACUG - 24 |
Stem-loop(if miRNA) |
--       A    AC     G    C   CG         A      ----------       U  U      U   GUCAUGA GUGU  AAGUG CGUG AAU  UUUUGAAAA GAGUGA          GAUUUAU AU AAAAAA U   ||||||| ||||  ||||| |||| |||  ||||||||| ||||||          ||||||| || ||||||   CAGUACU CACA  UUCAC GCAU UUA  GAAACUUUU UUCACU          CUAAAUA UA UUUUUU A GU       -    CU     G    A   AU         -      UAUUUAUAUC       -  C      A |
Stem-loop sequence | GUCAUGAAGUGUACAAGUGGCGUGCAAUCGUUUUGAAAAAGAGUGAGAUUUAUUAUUAAAAAAUUAAUUUUUUCAUAUAAAUCCUAUAUUUAUUCACUUUUUUCAAAGUAAUUAUACGGCACUUUCACACUCAUGACUG |