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BaseInfo

ncRNA ID novel_jre_miR542
Species Juglans regia
Class miRNA
Genome position NW_017389683.1:86440-86578 [-]
Reference genome wgs.5d
Source SRR1170960;SRR1170964;SRR1170966;SRR1170970;SRR1168883;SRR1168886
Length 24
Mature sequence(if miRNA) 1 - ACGGCACUUUCACACUCAUGACUG - 24
Stem-loop(if miRNA) --       A    AC     G    C   CG         A      ----------       U  U      U
  GUCAUGA GUGU  AAGUG CGUG AAU  UUUUGAAAA GAGUGA          GAUUUAU AU AAAAAA U
  ||||||| ||||  ||||| |||| |||  ||||||||| ||||||          ||||||| || ||||||
  CAGUACU CACA  UUCAC GCAU UUA  GAAACUUUU UUCACU          CUAAAUA UA UUUUUU A
GU       -    CU     G    A   AU         -      UAUUUAUAUC       -  C      A
Stem-loop sequence GUCAUGAAGUGUACAAGUGGCGUGCAAUCGUUUUGAAAAAGAGUGAGAUUUAUUAUUAAAAAAUUAAUUUUUUCAUAUAAAUCCUAUAUUUAUUCACUUUUUUCAAAGUAAUUAUACGGCACUUUCACACUCAUGACUG