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BaseInfo

ncRNA ID novel_jre_miR541
Species Juglans regia
Class miRNA
Genome position NW_017389385.1:33840-33929 [+]
Reference genome wgs.5d
Source SRR1170960
Length 24
Mature sequence(if miRNA) 67 - GAUGACUAUUGUAUUGCCUUGACC - 90
Stem-loop(if miRNA) --C  UAA                             A      C
   CA   CAAUACAAUAGUCAUCCUUAAGCAAUGUG GACUUA U
   ||   ||||||||||||||||||||||||||||| ||||||
   GU   GUUAUGUUAUCAGUAGGAAUUUGUUACAU CUGAAU A
CCA  UCC                             C      C
Stem-loop sequence CCAUAACAAUACAAUAGUCAUCCUUAAGCAAUGUGAGACUUACUACUAAGUCCUACAUUGUUUAAGGAUGACUAUUGUAUUGCCUUGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018972167.1
ncRNA:24   CCAG-----UUCCGUUAUGUUAUCAGUAG   1
  *||=-----|||||||*|||||||||||*
targets:1124   AGUUGUGGAAAGGCAAGACAAUAGUCAUG   1152

2.5 PREDICTED: Juglans regia trihelix transcription factor GT-2-like (LOC108996329), mRNA NA coding protein psRNATarget