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BaseInfo

ncRNA ID	novel_jre_miR540
Species	Juglans regia
Class	miRNA
Genome position	NW_017389361.1:1267813-1267922 [-]
Reference genome	wgs.5d
Source	SRR1168796;SRR1170969
Length	24
Mature sequence(if miRNA)	1 - UUUCAAAGUGACUGCACGACGCUU - 24
Stem-loop(if miRNA)	--A         A              A     ----------      UAUU   A  U    CGUCGUGCA UCGCUUUGAAAAAA GUGGA          GUCUAC    AAA AA U    ||||||||| |||||||||||||| |||||          ||||||    ||| || A    GCAGCACGU AGUGAAACUUUUUU CACUU          UAGGUG    UUU UU A UUC         C              -     AUUUAUACUC      UACU   C  U
Stem-loop sequence	ACGUCGUGCAAUCGCUUUGAAAAAAAGUGGAGUCUACUAUUAAAAAAUUAAUUUCUUUUCAUGUGGAUCUCAUAUUUAUUCACUUUUUUCAAAGUGACUGCACGACGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   |||=**|||||||||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.0	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   |||||*|*|||||||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   |||||*|*|||||||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.0	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019004598.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   |||||||*|||||||=|||||||| targets:1272   AAGCGUCAUGCAGUCGCUUUGAAA   1295 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018980788.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   |||||*|||||||||=|||||||| targets:1608   AAGCGCCGUGCAGUCGCUUUGAAA   1631 Target Full Sequence	2.5	PREDICTED: Juglans regia histone-lysine N-methyltransferase ATXR2-like (LOC109002870), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019004597.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   |||||||*|||||||=|||||||| targets:1391   AAGCGUCAUGCAGUCGCUUUGAAA   1414 Target Full Sequence	2.5	PREDICTED: Juglans regia branched-chain-amino-acid aminotransferase 2, chloroplastic-like (LOC109021870), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018969255.1	ncRNA:24   UUCGCAGCACGUCAGUGAAACUUU   1   *||||*||||||||||=||||||| targets:1914   CAGCGCCGUGCAGUCAUUUUGAAA   1937 Target Full Sequence	2.5	PREDICTED: Juglans regia CTP synthase-like (LOC108994151), transcript variant X1, mRNA	NA	coding protein	psRNATarget