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BaseInfo

ncRNA ID novel_jre_miR539
Species Juglans regia
Class miRNA
Genome position NW_017389344.1:523031-523102 [+]
Reference genome wgs.5d
Source SRR1170960;SRR1170961;SRR1170962;SRR1170963;SRR1168881
Length 24
Mature sequence(if miRNA) 1 - AGUAGCACUCUGGUUCCCGAGAUU - 24
Stem-loop(if miRNA) -- G   C      -G           -UCU    AU
  A UAG ACUCUG  UUCCCGAGAUU    AUAG  A
  | ||| ||||||  |||||||||||    ||||
  U AUU UGGGGC  AAGGGUUCUAA    UAUU  A
UA G   A      AA           UUCU    CC
Stem-loop sequence AGUAGCACUCUGGUUCCCGAGAUUUCUAUAGAUAACCUUAUUCUUAAUCUUGGGAAAACGGGGUAUUAGUAU