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BaseInfo

ncRNA ID	novel_jre_miR534
Species	Juglans regia
Class	miRNA
Genome position	NW_017389340.1:50678-50787 [+]
Reference genome	wgs.5d
Source	SRR1168796
Length	24
Mature sequence(if miRNA)	87 - UUUCAAAGUGAUUGCACGGCACUU - 110
Stem-loop(if miRNA)	----  ACUA                  ---       ------       AUU       U     GC    UGCAGUCACUUUGAAAAA   GAGUAGA      AUCCACA   AAAAAAU A     ||    ||||||||||||||||||   |||||||      |||||||   |||||||     CG    ACGUUAGUGAAACUUUUU   CUUAUUU      UGGGUGU   UUUUUUA U UUCA  --GC                  UCA       AUGCCC       -AC       U
Stem-loop sequence	GCACUAUGCAGUCACUUUGAAAAAGAGUAGAAUCCACAAUUAAAAAAUUAUUAUUUUUUCAUGUGGGUCCCGUAUUUAUUCACUUUUUUCAAAGUGAUUGCACGGCACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018994468.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   ||||*|||||||=||||||||||| targets:1452   AAGUACCGUGCAGUCACUUUGAAA   1475 Target Full Sequence	1.5	PREDICTED: Juglans regia serine/threonine-protein phosphatase PP1-like (LOC109012694), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_018952930.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   |||*|||*||||=||||||||||| targets:3183   AAGCGCCUUGCAGUCACUUUGAAA   3206 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018952929.1	ncRNA:24   UUCACGGCACGUUAGUGAAACUUU   1   |||*|||*||||=||||||||||| targets:3186   AAGCGCCUUGCAGUCACUUUGAAA   3209 Target Full Sequence	2.5	PREDICTED: Juglans regia pullulanase 1, chloroplastic (LOC108981688), transcript variant X1, mRNA	NA	coding protein	psRNATarget