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BaseInfo

ncRNA ID	novel_jre_miR526
Species	Juglans regia
Class	miRNA
Genome position	NW_017389342.1:33954-34091 [-]
Reference genome	wgs.5d
Source	SRR1170959
Length	24
Mature sequence(if miRNA)	1 - ACAGGAAGUAUACAGAAGAACACC - 24
Stem-loop(if miRNA)	--          -    -C   U  AAAUUGACA    U    UCAG    U       UUUU      --       U   UGUUUUUCUG GUAC  CCU UG         AAAU AUGC    AUUC CUGUUUU    UUUACA  AGUAAGA A   |||||||||| ||||  ||| ||         |||| ||||    |||| |||||||    ||||||  |||||||   ACAAGAAGAC UAUG  GGA AC         UUUA UAUG    UAAG GAUAAAG    AAGUGU  UUAUUUU A CC          A    AA   C  --------G    C    ----    -       ---U      AG       A
Stem-loop sequence	UGUUUUUCUGGUACCCCUUUGAAAUUGACAAAAUUAUGCUCAGAUUCUCUGUUUUUUUUUUUACAAGUAAGAUAAAUUUUAUUGAUGUGAAUGAAAUAGGAAUGUAUCAUUUGCACAGGAAGUAUACAGAAGAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018992111.1	ncRNA:24   CCACAAGAAGACAUAUGAAGGACA   1   |*|*|||||=|||||||||||||| targets:772   GCUUUUCUUUUGUAUACUUCCUGU   795 Target Full Sequence	1.0	PREDICTED: Juglans regia DEAD-box ATP-dependent RNA helicase 1 (LOC109011065), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018974248.1	ncRNA:24   CCACAAGAAGACAUAUGAAGGACA   1   |****||||=|||||||||||||| targets:704   GCAUCUCUUUUGUAUACUUCCUGU   727 Target Full Sequence	1.0	PREDICTED: Juglans regia peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like (LOC108997863), mRNA	NA	coding protein	psRNATarget
XM_018964746.1	ncRNA:24   CCACAAGAAG-ACAUAUGAAGGACA   1   *||-||||||-|||||||||||||| targets:1088   CGU-UUCUUCAUGUAUACUUCCUGU   1111 Target Full Sequence	2.0	PREDICTED: Juglans regia PRA1 family protein A1-like (LOC108990704), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018964745.1	ncRNA:24   CCACAAGAAG-ACAUAUGAAGGACA   1   *||-||||||-|||||||||||||| targets:1162   CGU-UUCUUCAUGUAUACUUCCUGU   1185 Target Full Sequence	2.0	PREDICTED: Juglans regia PRA1 family protein A1-like (LOC108990704), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018953672.1	ncRNA:24   CCACAAGAAGACAUAUGAAGGACA   1   ||*||||||=|||||||*|||||| targets:41   GGCGUUCUUUUGUAUACCUCCUGU   64 Target Full Sequence	2.5	PREDICTED: Juglans regia probable ATP-dependent RNA helicase ddx10 (LOC108982332), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018953670.1	ncRNA:24   CCACAAGAAGACAUAUGAAGGACA   1   ||*||||||=|||||||*|||||| targets:34   GGCGUUCUUUUGUAUACCUCCUGU   57 Target Full Sequence	2.5	PREDICTED: Juglans regia probable ATP-dependent RNA helicase ddx10 (LOC108982332), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018953671.1	ncRNA:24   CCACAAGAAGACAUAUGAAGGACA   1   ||*||||||=|||||||*|||||| targets:35   GGCGUUCUUUUGUAUACCUCCUGU   58 Target Full Sequence	2.5	PREDICTED: Juglans regia probable ATP-dependent RNA helicase ddx10 (LOC108982332), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018956835.1	ncRNA:24   CCACAA-GAAGACAUAUGAAGGACA   1   ||||||-|||*|||||||||||||| targets:2919   GGUGUUUCUUGUGUAUACUUCCUGU   2943 Target Full Sequence	3.0	PREDICTED: Juglans regia uncharacterized LOC108984780 (LOC108984780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018956834.1	ncRNA:24   CCACAA-GAAGACAUAUGAAGGACA   1   ||||||-|||*|||||||||||||| targets:2949   GGUGUUUCUUGUGUAUACUUCCUGU   2973 Target Full Sequence	3.0	PREDICTED: Juglans regia uncharacterized LOC108984780 (LOC108984780), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018994220.1	ncRNA:24   CCACAAGAAGACAUAUGAAGGACA   1   *|||**=||*|||||||||||||| targets:382   AGUGGAUUUAUGUAUACUUCCUGU   405 Target Full Sequence	3.0	PREDICTED: Juglans regia repressor of RNA polymerase III transcription MAF1 homolog (LOC109012518), mRNA	NA	coding protein	psRNATarget