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BaseInfo

ncRNA ID novel_jre_miR501
Species Juglans regia
Class miRNA
Genome position NW_017442404.1:184918-185004 [-]
Reference genome wgs.5d
Source SRR1170959
Length 21
Mature sequence(if miRNA) 67 - CAAACUGACGUGACUUAAGCA - 87
Stem-loop(if miRNA) --C            C  AA  -----AA    UUAGAUUGUAAAA
   AAACUGACGUGA UU  GC       UACA             U
   |||||||||||| ||  ||       ||||             U
   UUUGACUGCACU AA  CG       GAUG             A
GUA            -  GA  CAAUCUA    AAAUUUAAUUUUC
Stem-loop sequence CAAACUGACGUGACUUAAGCAAUACAUUAGAUUGUAAAAUUACUUUUAAUUUAAAGUAGAUCUAACGCAGAAUCACGUCAGUUUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_018994171.1
ncRNA:21   ACGAAUUCAGUGCAGUCAAAC   1
  ***|*||||||||||||||||
targets:3317   AAAUAAAGUCACGUCAGUUUG   3337

2.0 PREDICTED: Juglans regia UBP1-associated protein 2C-like (LOC109012455), transcript variant X10, mRNA NA coding protein psRNATarget
XM_018994156.1
ncRNA:21   ACGAAUUCAGUGCAGUCAAAC   1
  ***|*||||||||||||||||
targets:3352   AAAUAAAGUCACGUCAGUUUG   3372

2.0 PREDICTED: Juglans regia UBP1-associated protein 2C-like (LOC109012455), transcript variant X8, mRNA NA coding protein psRNATarget
XM_018994164.1
ncRNA:21   ACGAAUUCAGUGCAGUCAAAC   1
  ***|*||||||||||||||||
targets:3357   AAAUAAAGUCACGUCAGUUUG   3377

2.0 PREDICTED: Juglans regia UBP1-associated protein 2C-like (LOC109012455), transcript variant X9, mRNA NA coding protein psRNATarget
XM_019004027.1
ncRNA:21   ACGAAUUCAGUGCAGUCAAAC   1
  *|*|*||*|||||||||||||
targets:549   AGAUCAAAUCACGUCAGUUUG   569

3.0 PREDICTED: Juglans regia short-chain dehydrogenase TIC 32, chloroplastic-like (LOC109021409), partial mRNA NA coding protein psRNATarget
XM_018975767.1
ncRNA:21   ACGAAUUCAGUGCAGUCAAAC   1
  *|*|*||*|||||||||||||
targets:1396   AGAUCAAAUCACGUCAGUUUG   1416

3.0 PREDICTED: Juglans regia short-chain dehydrogenase TIC 32, chloroplastic-like (LOC108998989), mRNA NA coding protein psRNATarget
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