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BaseInfo

ncRNA ID	novel_jre_miR493
Species	Juglans regia
Class	miRNA
Genome position	NW_017388871.1:232150-232279 [-]
Reference genome	wgs.5d
Source	SRR1170959
Length	21
Mature sequence(if miRNA)	1 - AGGUUCAGGUGCUGAUGCAGU - 21
Stem-loop(if miRNA)	--      U       C    C    U  CUUUCUCUCU    -CUC  -    AA   GCUU  A     G   UGCAUU GCACCUG ACCU UACU GU          UGCU    UC UCUC  CCA    UA AGCUU C   |||||| ||||||| |||| |||| ||          ||||    || ||||  |||    || ||||| C   ACGUAG CGUGGAC UGGA GUGG CA          ACGA    AG AGAG  GGU    AU UUGAA A UG      U       U    C    U  ----------    ACCA  U    -G   --AU  A     A
Stem-loop sequence	UGCAUUUGCACCUGCACCUCUACUUGUCUUUCUCUCUUGCUCUCUCUCUCAACCAGCUUUAAAGCUUGCCAAAAGUUAUAUAUGGGGAGAUGAACCAAGCAACUGGUGCAGGUUCAGGUGCUGAUGCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018959044.1	ncRNA:21   UGACGUAGUCGUGGACUUGGA   1   *|*|||||||||||||*|||| targets:899   UCAGCAUCAGCACCUGCACCU   919 Target Full Sequence	2.5	PREDICTED: Juglans regia biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like (LOC108986433), mRNA	NA	coding protein	psRNATarget
XM_018982730.1	ncRNA:21   UGACGUAGUCGUGGACUUGGA   1   =*||||*|||||*|||||||| targets:276   GGUGCAGCAGCAGCUGAACCU   296 Target Full Sequence	2.5	PREDICTED: Juglans regia mediator of RNA polymerase II transcription subunit 8 (LOC109004244), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018982729.1	ncRNA:21   UGACGUAGUCGUGGACUUGGA   1   =*||||*|||||*|||||||| targets:276   GGUGCAGCAGCAGCUGAACCU   296 Target Full Sequence	2.5	PREDICTED: Juglans regia mediator of RNA polymerase II transcription subunit 8 (LOC109004244), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018982728.1	ncRNA:21   UGACGUAGUCGUGGACUUGGA   1   =*||||*|||||*|||||||| targets:276   GGUGCAGCAGCAGCUGAACCU   296 Target Full Sequence	2.5	PREDICTED: Juglans regia mediator of RNA polymerase II transcription subunit 8 (LOC109004244), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018982727.1	ncRNA:21   UGACGUAGUCGUGGACUUGGA   1   =*||||*|||||*|||||||| targets:276   GGUGCAGCAGCAGCUGAACCU   296 Target Full Sequence	2.5	PREDICTED: Juglans regia mediator of RNA polymerase II transcription subunit 8 (LOC109004244), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018990764.1	ncRNA:21   UGACGUAGUCGUGGACUUGGA   1   |****|||||||||||||||| targets:842   AAAAGAUCAGCACCUGAACCU   862 Target Full Sequence	3.0	PREDICTED: Juglans regia zinc protease PQQL-like (LOC109010051), mRNA	NA	coding protein	psRNATarget