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BaseInfo

ncRNA ID	novel_jre_miR476
Species	Juglans regia
Class	miRNA
Genome position	NW_017389275.1:7924-8001 [-]
Reference genome	wgs.5d
Source	SRR1170958
Length	24
Mature sequence(if miRNA)	1 - AAGAUGACUUGAGAUGAACUGAGA - 24
Stem-loop(if miRNA)	--     C UG    UGA UG   ----   UG -UUA   U   UUAGU U  UCUU   U  UCU    GUC  A    CUC U   ||||| |  ||||   |  |||    |||  |    |||   AGUCA A  AGAG   A  AGA    UAG  U    GAG A AG     - GU    UUC GU   AGCU   GU UGCA   G
Stem-loop sequence	UUAGUCUUGUCUUUGAUUGUCUGUCUGAUUACUCUUAGGAGACGUUUGGAUUCGAAGAUGACUUGAGAUGAACUGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018952012.1	ncRNA:24   AGAGUCAAGUAGAGUUCAGUAGAA   1   |||||*|||||||||||||||||| targets:2997   UCUCAAUUCAUCUCAAGUCAUCUU   3020 Target Full Sequence	1.0	PREDICTED: Juglans regia uncharacterized LOC108980951 (LOC108980951), mRNA	NA	coding protein	psRNATarget
XM_019005054.1	ncRNA:24   AGAGUCAAGUAGAGUUCAGUAGAA   1   |||||**||||||||||||||||| targets:4   UCUCAACUCAUCUCAAGUCAUCUU   27 Target Full Sequence	2.0	PREDICTED: Juglans regia uncharacterized LOC109022216 (LOC109022216), mRNA	NA	coding protein	psRNATarget
XM_018970247.1	ncRNA:24   AGAGUCAAGUAGAGUUCAGUAGAA   1   |||||**||||||||||||||||| targets:1007   UCUCAACUCAUCUCAAGUCAUCUU   1030 Target Full Sequence	2.0	PREDICTED: Juglans regia high mobility group B protein 3-like (LOC108994852), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018963219.1	ncRNA:24   AGAGUCAAGUAGAGUUCAGUAGAA   1   ||||||*|||||||||||=||||| targets:13   UCUCAGCUCAUCUCAAGUUAUCUU   36 Target Full Sequence	2.5	PREDICTED: Juglans regia protein PIN-LIKES 3-like (LOC108989567), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018970378.1	ncRNA:24   AGAGUCAAGUAGAGUUCAGUAGAA   1   ||||||||||||||||*||||||* targets:1395   UCUCAGUUCAUCUCAACUCAUCUC   1418 Target Full Sequence	2.5	PREDICTED: Juglans regia mitochondrial succinate-fumarate transporter 1 (LOC108994938), mRNA	NA	coding protein	psRNATarget
XM_018994808.1	ncRNA:24   AG-AGUCAAGUAGAGUUCAGUAGAA   1   ||-|=||||=||||||||||||*|| targets:1537   UCAUUAGUUUAUCUCAAGUCAUGUU   1561 Target Full Sequence	2.5	PREDICTED: Juglans regia RNA-binding protein 25 (LOC109012907), mRNA	NA	coding protein	psRNATarget